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[188207_s_at]

Description C50F7.5_rc /REP_DB=WormBase Gene ID /WP=CE04243 /TR=Q18751 /GB=AAA83301.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 34      4grp_total > 45      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 47.7
(3)
P 		39.8
(1.9)
A 		23.5
(-0.4)
A 		5.5
(-3)
A 		42
B 55.3
(3)
A 		33.6
(0.6)
A 		2
(-3)
A 		2.6
(-2.9)
A 		53
C 42
(3)
A 		17.1
(-1.1)
A 		8
(-2.6)
A 		5.8
(-3)
A 		36
avr 48.3
(3) 		30.2
(0.5) 		11.2
(-2.1) 		4.6
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 47.9
(0.9)
A 		39.6
(-0.4)
M 		61.4
(3)
P 		23.1
(-3)
A 		36.3
(-0.9)
A 		32.2
(-1.6)
A 		38
B 56.3
(3)
P 		33.5
(-0.8)
A 		47.5
(1.5)
A 		20.2
(-3)
A 		36.3
(-0.3)
M 		32.2
(-1)
A 		36
C 34.7
(1.7)
A 		41.5
(2.8)
A 		32.1
(1.3)
A 		6.3
(-2.8)
A 		42.7
(3)
A 		4.8
(-3)
A 		38
avr 46.3
(2.9) 		38.2
(1.3) 		47
(3) 		16.5
(-3) 		38.4
(1.3) 		23.1
(-1.7) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.4
(3)
P 		8.6
(-0.2)
A 		6.1
(-1.1)
A 		0.8
(-3)
A 		17
B 17.7
(3)
A 		8.3
(-0.3)
A 		0.5
(-3)
A 		0.6
(-3)
A 		17
C 13.9
(3)
A 		4.9
(-1.2)
A 		2.8
(-2.2)
A 		1
(-3)
A 		13
avr 16.3
(3) 		7.3
(-0.5) 		3.1
(-2.1) 		0.8
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.8
(-0.9)
A 		14.1
(3)
M 		13.4
(2.5)
P 		5.9
(-3)
A 		11
(0.7)
A 		7.8
(-1.6)
A 		8
B 19.6
(3)
P 		11.2
(-0.5)
A 		11.5
(-0.4)
A 		5.4
(-3)
A 		14.7
(0.9)
M 		12
(-0.2)
A 		14
C 12.9
(2.6)
A 		12.7
(2.5)
A 		8.2
(0.3)
A 		1.3
(-3)
A 		13.8
(3)
A 		1.6
(-2.9)
A 		13
avr 13.8
(3) 		12.7
(2.3) 		11
(1.3) 		4.2
(-3) 		13.2
(2.6) 		7.1
(-1.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188207_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28132
Sequence Type Exemplar sequence
Representative Public ID C50F7.5 NCBI
Target Description C50F7.5_rc /REP_DB=WormBase Gene ID /WP=CE04243 /TR=Q18751 /GB=AAA83301.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C50F7.5
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C50F7.5 C50F7.5_rc /REP_DB=WormBase Gene ID /WP=CE04243 /TR=Q18751 /GB=AAA83301.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068862 11/11 Negative Strand Matching Probes A 
SNAP00000024186 11/11 Negative Strand Matching Probes None
GENEFINDER00000024199 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7726708-7727638(-) 97.1 100.0
Public Domain and Genome References
Ensembl C50F7.5
Sequence
Target Sequence 
>C. ELEGANS:188207_S_AT
tgaggatcttcggatggctctacagatggttgaggatcttcggatgggtccactggtccc
ggagatggtgggccagatggttgatgatcttcggatggctctacagatggttgaggatct
tcggatgggtccactggtcccggagatggtgggccagatggttgaggatcttcggatgga
tttacaggtcctggtgatggtggtccagatggagacggttcatctgatggggctacagta
cctggagatggctcgttggatggctgaggaacaactgatgtcggcaggattggatcagcg
gacgatgcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGATCTTCGGATGGCTCTACAG 403 567 431 Antisense
GTTGAGGATCTTCGGATGGGTCCAC 144 439 459 Antisense
GGGCCAGATGGTTGATGATCTTCGG 274 493 500 Antisense
TCTTCGGATGGCTCTACAGATGGTT 309 617 518 Antisense
TGAGGATCTTCGGATGGGTCCACTG 402 567 542 Antisense
GGATCTTCGGATGGATTTACAGGTC 266 509 596 Antisense
TTACAGGTCCTGGTGATGGTGGTCC 133 669 612 Antisense
ATCTGATGGGGCTACAGTACCTGGA 611 33 652 Antisense
AGTACCTGGAGATGGCTCGTTGGAT 472 59 667 Antisense
GGCTGAGGAACAACTGATGTCGGCA 52 541 692 Antisense
GGATTGGATCAGCGGACGATGCGAT 543 505 717 Antisense
Sequence Source Affymetrix Proprietary Database