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[188206_at]

Description C50F7.5_rc /REP_DB=WormBase Gene ID /WP=CE04243 /TR=Q18751 /GB=AAA83301.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 43      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.8
(-1.7)
A 		4.9
(0.3)
A 		6.4
(3)
A 		3.1
(-3)
A 		3
B 11.2
(3)
A 		9
(1.4)
A 		6.1
(-0.7)
A 		2.9
(-3)
A 		8
C 15.8
(3)
A 		6.5
(-1.2)
A 		2.4
(-3)
A 		3.1
(-2.7)
A 		13
avr 10.3
(3) 		6.8
(0.1) 		5
(-1.4) 		3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 33.4
(3)
A 		5.5
(-2.5)
A 		32.3
(2.8)
A 		3.1
(-3)
A 		5.7
(-2.5)
A 		4.7
(-2.7)
A 		30
B 34.1
(3)
A 		10.7
(-1.6)
A 		22.6
(0.7)
A 		6.1
(-2.5)
A 		3.5
(-3)
A 		6.7
(-2.4)
A 		31
C 2.8
(-2.8)
A 		5.5
(-2.4)
A 		40.4
(3)
A 		31.7
(1.6)
A 		24.1
(0.5)
A 		1.8
(-3)
A 		39
avr 23.4
(1.2) 		7.2
(-2.4) 		31.8
(3) 		13.6
(-1) 		11.1
(-1.5) 		4.4
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.4
(1.5)
A 		1.1
(0)
A 		1.7
(3)
A 		0.5
(-3)
A 		1
B 3.6
(3)
A 		2.2
(0.2)
A 		1.4
(-1.4)
A 		0.6
(-3)
A 		3
C 5.2
(3)
A 		1.9
(-1.2)
A 		0.8
(-2.6)
A 		0.5
(-3)
A 		5
avr 3.4
(3) 		1.7
(-0.5) 		1.3
(-1.3) 		0.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.2
(2.2)
A 		1.9
(-1.9)
A 		7
(3)
A 		0.8
(-3)
A 		1.7
(-2.1)
A 		1.1
(-2.7)
A 		6
B 11.8
(3)
A 		3.5
(-1.8)
A 		5.5
(-0.6)
A 		1.6
(-2.9)
A 		1.4
(-3)
A 		2.5
(-2.4)
A 		10
C 1
(-2.8)
A 		1.7
(-2.3)
A 		10.3
(3)
A 		6.4
(0.6)
A 		7.8
(1.5)
A 		0.6
(-3)
A 		10
avr 6.3
(1.7) 		2.4
(-2) 		7.6
(3) 		2.9
(-1.5) 		3.6
(-0.9) 		1.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28132
Sequence Type Exemplar sequence
Representative Public ID C50F7.5 NCBI
Target Description C50F7.5_rc /REP_DB=WormBase Gene ID /WP=CE04243 /TR=Q18751 /GB=AAA83301.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C50F7.5
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C50F7.5 C50F7.5_rc /REP_DB=WormBase Gene ID /WP=CE04243 /TR=Q18751 /GB=AAA83301.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068862 11/11 Negative Strand Matching Probes A 
SNAP00000024186 11/11 Negative Strand Matching Probes None
GENEFINDER00000024199 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7726708-7727638(-) 97.1 100.0
Public Domain and Genome References
Ensembl C50F7.5
Sequence
Target Sequence 
>C. ELEGANS:188206_AT
tcttcggatggatcgactggtcctggagatggtggaccagatggttgaggatcttcggat
ggctctacagatggttgaggatcttcggatgggtccactggtcccggagatggtgggcca
gatggttgatgatcttcggatggctctacagatggttgaggatcttcggatgggtccact
ggtcccggagatggtgggccagatggttgaggatcttcggatggatttacaggtcctggt
gatggtggtccagatggagacggttcatctgatggggctacagtacctggagatggctcg
ttggatggctgaggaacaactgatgtcggcaggattggatcagcggacgatgcgatgact
ggtgcagatgacgatccagcaataggtaaatctgacgatgtcggtgcaaatgttgtagtt
gctattcctcgggatgtacgaggcgcctttgtcttatgatggtgatggtggtggtggtga
tggccacgaccaagatcagaaggagctgcgaacgttgcaccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGGATGGATCGACTGGTCCTG 308 617 386 Antisense
GATGACTGGTGCAGATGACGATCCA 14 413 739 Antisense
GATGACGATCCAGCAATAGGTAAAT 350 411 752 Antisense
GACGATGTCGGTGCAAATGTTGTAG 430 377 779 Antisense
AATGTTGTAGTTGCTATTCCTCGGG 668 163 794 Antisense
AGTTGCTATTCCTCGGGATGTACGA 36 65 802 Antisense
ATGTACGAGGCGCCTTTGTCTTATG 587 31 819 Antisense
GGCGCCTTTGTCTTATGATGGTGAT 169 543 827 Antisense
GGTGGTGATGGCCACGACCAAGATC 155 499 858 Antisense
GGCCACGACCAAGATCAGAAGGAGC 568 541 867 Antisense
AAGGAGCTGCGAACGTTGCACCAGC 202 161 885 Antisense
Sequence Source Affymetrix Proprietary Database