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[188205_at]

Description Y51A2A.4_rc /REP_DB=WormBase Gene ID /WP=CE25360 /TR=Q9U269 /GB=CAB63378.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 56      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 36.8
(-1.7)
M 		14.6
(-3)
A 		19.5
(-2.7)
A 		118
(3)
P 		103
B 4.8
(-2.7)
A 		2.2
(-3)
A 		20.3
(-1.1)
A 		59.8
(3)
P 		58
C 5.1
(-3)
A 		34.4
(-1.3)
A 		12.1
(-2.6)
A 		106.7
(3)
A 		102
avr 15.6
(-3) 		17.1
(-2.9) 		17.3
(-2.9) 		94.8
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6.4
(-1.9)
A 		4.3
(-2.5)
A 		18.6
(1.6)
A 		2.6
(-3)
A 		12.4
(-0.2)
A 		23.5
(3)
A 		21
B 15
(2.3)
A 		16.7
(3)
A 		2.6
(-2.5)
A 		1.4
(-3)
A 		5.6
(-1.4)
A 		11.8
(1.1)
A 		15
C 3.7
(-2.7)
A 		21.4
(0.4)
A 		15.1
(-0.7)
A 		2.1
(-3)
A 		2
(-3)
A 		35.9
(3)
A 		34
avr 8.4
(-1.2) 		14.1
(0.3) 		12.1
(-0.2) 		2
(-3) 		6.7
(-1.7) 		23.7
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.4
(1.3)
M 		3.2
(-3)
A 		5.1
(-2.2)
A 		17.3
(3)
P 		14
B 1.5
(-2.6)
A 		0.6
(-3)
A 		4.7
(-1)
A 		12.7
(3)
P 		12
C 1.7
(-3)
A 		9.9
(0)
A 		4.2
(-2.1)
A 		18
(3)
A 		16
avr 5.5
(-2.5) 		4.6
(-3) 		4.7
(-2.9) 		16
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-2.4)
A 		1.5
(-2)
A 		4
(1)
A 		0.7
(-3)
A 		3.7
(0.6)
A 		5.7
(3)
A 		5
B 5.2
(2.5)
A 		5.6
(3)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		2.3
(-0.8)
A 		4.4
(1.6)
A 		5
C 1.4
(-2.5)
A 		6.5
(0.2)
A 		3.8
(-1.2)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		12
(3)
A 		12
avr 2.6
(-1.2) 		4.5
(0.5) 		2.8
(-1) 		0.5
(-3) 		2.2
(-1.5) 		7.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28156
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.4 NCBI
Target Description Y51A2A.4_rc /REP_DB=WormBase Gene ID /WP=CE25360 /TR=Q9U269 /GB=CAB63378.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y51A2A.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y51A2A.4 Y51A2A.4_rc /REP_DB=WormBase Gene ID /WP=CE25360 /TR=Q9U269 /GB=CAB63378.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075179 11/11 Negative Strand Matching Probes A 
SNAP00000039468 11/11 Negative Strand Matching Probes None
GENEFINDER00000039481 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18293507-18293922(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y51A2A.4
Sequence
Target Sequence 
>C. ELEGANS:188205_AT
ttatccaacaatgacatcagtgccgaaatgtcccttattatcagctcctccttcaagaac
accgtcgtgtataacttcaccaaaaccgtttagaattgttccttgataaatgtgtcgatt
atctgcatcattatgatcatgatcatgctcaaaatcaacatctgagtcatctgagtcatc
atgaccatgggagagtctcaagtttgcagaagcagctacatcggcatctccaatagctcc
tgttgcgtgtccaataatatttgaggccgcatcatgaatattctggcagaacccaaagtt
tgcaacacaggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCCAACAATGACATCAGTGCCG 645 679 13 Antisense
ATCAGTGCCGAAATGTCCCTTATTA 433 29 28 Antisense
CGAAATGTCCCTTATTATCAGCTCC 273 253 36 Antisense
AACACCGTCGTGTATAACTTCACCA 82 135 70 Antisense
ATGTGTCGATTATCTGCATCATTAT 647 49 122 Antisense
ACATCTGAGTCATCTGAGTCATCAT 65 107 170 Antisense
TGCAGAAGCAGCTACATCGGCATCT 90 577 217 Antisense
GCTACATCGGCATCTCCAATAGCTC 350 303 227 Antisense
GCTCCTGTTGCGTGTCCAATAATAT 104 297 248 Antisense
GAGGCCGCATCATGAATATTCTGGC 559 405 275 Antisense
AACCCAAAGTTTGCAACACAGGCGA 392 145 302 Antisense
Sequence Source Affymetrix Proprietary Database