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[188204_at] 7tm_1

Description H23L24.4 /REP_DB=WormBase Gene ID /WP=CE23819 /TR=Q9N5L5 /GB=AAF39895.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=7tm_1
Cluster 6grp_total > 22      4grp_total > 14      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 90.4
(3)
P 		26.3
(-3)
A 		25.9
(-3)
A 		82.9
(2.3)
A 		65
B 114.2
(2.4)
P 		35.3
(-3)
A 		58.5
(-1.4)
A 		123.2
(3)
P 		88
C 88.6
(0.3)
P 		61.4
(-1.8)
A 		45.7
(-3)
A 		123.2
(3)
A 		78
avr 97.7
(1.9) 		41
(-3) 		43.4
(-2.8) 		109.8
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 73.7
(0.7)
A 		57.9
(-0.4)
P 		107.8
(3)
A 		20.5
(-3)
A 		27.9
(-2.5)
A 		37.6
(-1.8)
A 		87
B 103.3
(0.6)
P 		148
(3)
P 		81
(-0.5)
A 		102.8
(0.6)
P 		75.7
(-0.8)
A 		34.1
(-3)
A 		114
C 76
(1.1)
P 		97.4
(3)
P 		71.8
(0.7)
A 		66.4
(0.2)
A 		31
(-3)
A 		32.6
(-2.9)
A 		66
avr 84.3
(1.5) 		101.1
(3) 		86.9
(1.7) 		63.2
(-0.4) 		44.9
(-2.1) 		34.8
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 32.9
(3)
P 		5.7
(-3)
A 		6.8
(-2.8)
A 		12.1
(-1.6)
A 		27
B 36.4
(3)
P 		8.7
(-3)
A 		13.5
(-2)
A 		26.3
(0.8)
P 		28
C 29.3
(3)
P 		17.7
(-2.2)
A 		15.9
(-3)
A 		20.8
(-0.8)
A 		13
avr 32.9
(3) 		10.7
(-3) 		12.1
(-2.6) 		19.7
(-0.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13.6
(-0.2)
A 		20.6
(2)
P 		23.5
(3)
A 		5.2
(-3)
A 		8.4
(-2)
A 		9.1
(-1.7)
A 		18
B 36
(0.8)
P 		49.3
(3)
P 		19.7
(-1.9)
A 		27.2
(-0.6)
P 		30.7
(-0)
A 		12.7
(-3)
A 		37
C 28.2
(2.5)
P 		29.7
(3)
P 		18.3
(-0.5)
A 		13.3
(-2)
A 		10
(-3)
A 		10.9
(-2.7)
A 		20
avr 25.9
(1) 		33.2
(3) 		20.5
(-0.4) 		15.2
(-1.8) 		16.4
(-1.5) 		10.9
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8565
Sequence Type Exemplar sequence
Representative Public ID H23L24.4 NCBI
Target Description H23L24.4 /REP_DB=WormBase Gene ID /WP=CE23819 /TR=Q9N5L5 /GB=AAF39895.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=7tm_1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069094 NCBI Caenorhabditis elegans H23L24.4 (7tm_1) mRNA, complete cds. 11/11 None
GENEFINDER00000025380 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8703033:8705586:-1 11/11 None
H23L24.4 ENSEMBL cdna:known chromosome:CEL140:IV:8703637:8705871:-1 gene:H23L24.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025373 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8703642-8705877(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7tm_1
Ensembl H23L24.4
Entrez Gene 186764 Entrez gene
SwissProt Q9N5L5 EMBL-EBI
WormBase CE23819 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39895 Hypothetical protein H23L24.4 [Caenorhabditis elegans] ref|NP_501495.1| H23L24.4 [Caenorhabditis elegans] 1.0E-171
blast AAF39895 Hypothetical protein H23L24.4 [Caenorhabditis elegans] ref|NP_501495.1| H23L24.4 [Caenorhabditis elegans] 1.0E-105
blast CAE56692 Hypothetical protein CBG24474 [Caenorhabditis briggsae] 8.0E-95
blast CAE56692 Hypothetical protein CBG24474 [Caenorhabditis briggsae] 3.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.6E-13
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.6E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501495.1 6 62-84,111-133,153-175,209-231,252-274,294-313
H23L24.4 6 62-84,111-133,153-175,209-231,252-274,294-313
GENEFINDER00000025380 7 18-40,52-74,94-116,140-162,196-218,239-261,281-300
Sequence
Target Sequence 
>C. ELEGANS:188204_AT
ggtcacatgatccaacgaattctagtgactatcagtatattctggcacacgagccttcgg
atttagcaagaaatgaaaattatcatagggtgttggataatcttctctacccattattag
tctacctggttcctcttctccttttatctgttttgaattttcgaattttatcaaatattt
cgaatcgaagagtatcattcgatcataagtcacgatttgcacaggaaagacgttctgtaa
cacttttgatatcaattgtgacaatgttcttcctgtgtcatacgggtggtcttgcatatc
gattcgtggatcaagaaaaatataataattcggaattatttgttcttttgaaggatgtca
tcaatttattattcaatgtgtactcattcacaaatccattgctatattttgtttttaccc
gccaatttcgtgatcttcgaaccatgtggaattcacactttgcatcgcctgcttctcgat
ccgagagctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCACATGATCCAACGAATTCTAG 31 503 536 Antisense
GGCACACGAGCCTTCGGATTTAGCA 596 535 579 Antisense
GGTGTTGGATAATCTTCTCTACCCA 256 501 624 Antisense
AATCTTCTCTACCCATTATTAGTCT 17 171 634 Antisense
TTATTAGTCTACCTGGTTCCTCTTC 77 679 649 Antisense
GACGTTCTGTAACACTTTTGATATC 97 377 764 Antisense
AATGTTCTTCCTGTGTCATACGGGT 30 163 798 Antisense
TACGGGTGGTCTTGCATATCGATTC 44 645 816 Antisense
GTGTACTCATTCACAAATCCATTGC 660 485 913 Antisense
TGCTATATTTTGTTTTTACCCGCCA 572 577 935 Antisense
GCCTGCTTCTCGATCCGAGAGCTAT 313 283 1002 Antisense
Sequence Source Affymetrix Proprietary Database