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[188198_s_at]

Description Y41G9A.1 /REP_DB=WormBase Gene ID /WP=CE28361 /GEN=osm-5 /TR=Q9N4Z9 /GB=AAF60551.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_total > 27      4grp_total > 22      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 224.7
(2.6)
P 		139.2
(-0.6)
P 		75.6
(-3)
P 		236.3
(3)
P 		161
B 273.4
(3)
P 		61.1
(-3)
P 		72.9
(-2.7)
P 		218.9
(1.5)
P 		212
C 251.5
(3)
P 		79.2
(-2.5)
P 		64.5
(-3)
P 		209.3
(1.6)
P 		187
avr 249.9
(3) 		93.2
(-2.3) 		71
(-3) 		221.5
(2) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 144
(3)
P 		144.5
(3)
P 		100.8
(-0.3)
P 		79.9
(-1.8)
P 		64.5
(-3)
P 		98.9
(-0.4)
P 		80
B 176.8
(3)
P 		75.2
(-2.1)
P 		97.4
(-0.9)
P 		64
(-2.6)
A 		56.1
(-3)
P 		124.8
(0.4)
P 		121
C 158.3
(3)
P 		77.2
(-1.9)
P 		114.6
(0.4)
P 		98.2
(-0.6)
P 		59.3
(-3)
P 		130.8
(1.3)
P 		99
avr 159.7
(3) 		99
(-0.7) 		104.3
(-0.3) 		80.7
(-1.8) 		60
(-3) 		118.2
(0.5) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 81.8
(3)
P 		30.2
(-2)
P 		19.8
(-3)
P 		34.6
(-1.6)
P 		62
B 87.2
(3)
P 		15.1
(-3)
P 		16.9
(-2.9)
P 		46.7
(-0.4)
P 		72
C 83.3
(3)
P 		22.8
(-3)
P 		22.5
(-3)
P 		35.3
(-1.7)
P 		61
avr 84.1
(3) 		22.7
(-2.7) 		19.7
(-3) 		38.9
(-1.2) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 26.6
(-1.7)
P 		51.4
(3)
P 		22
(-2.5)
P 		20.3
(-2.8)
P 		19.5
(-3)
P 		24.1
(-2.1)
P 		32
B 61.5
(3)
P 		25
(-1.9)
P 		23.6
(-2.1)
P 		17
(-3)
A 		22.8
(-2.2)
P 		46.5
(1)
P 		45
C 58.7
(3)
P 		23.6
(-2.3)
P 		29.2
(-1.5)
P 		19.8
(-2.9)
P 		19.2
(-3)
P 		43.8
(0.7)
P 		40
avr 48.9
(3) 		33.3
(-0.1) 		24.9
(-1.8) 		19
(-3) 		20.5
(-2.7) 		38.1
(0.8) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188198_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18513
Sequence Type Exemplar sequence
Representative Public ID Y41G9A.1 NCBI
Target Description Y41G9A.1 /REP_DB=WormBase Gene ID /WP=CE28361 /GEN=osm-5 /TR=Q9N4Z9 /GB=AAF60551.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076110 NCBI Caenorhabditis elegans OSMotic avoidance abnormal family member (osm-5) (osm-5) mRNA, complete cds. 11/11 A 
GENEFINDER00000022743 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2984269:2991369:1 11/11 None
Y41G9A.1 ENSEMBL cdna:known chromosome:CEL140:X:2984269:2991366:1 gene:Y41G9A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2984268-2991421(+) 99.12 100.0
Public Domain and Genome References
Gene Title
Gene Symbol osm-5
Ensembl Y41G9A.1
Entrez Gene 180585 Entrez gene
SwissProt Q9N4Z9 EMBL-EBI
WormBase CE28361 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585636_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CANINE_2:CFA.9556.1.A1_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CANINE_2:CFA.9556.1.A1_S_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CANINE_2:CFAAFFX.11770.1.S1_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CANINE_2:CFAAFFX.11777.1.S1_S_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CHICKEN:GGA.15233.1.S1_S_AT tetratricopeptide repeat domain 10 gga
CHICKEN:GGAAFFX.10981.1.S1_S_AT tetratricopeptide repeat domain 10 gga
CHICKEN:GGAAFFX.25177.1.S1_AT tetratricopeptide repeat domain 10 gga
HG-U133_PLUS_2:204703_AT tetratricopeptide repeat domain 10 hs
HG-U133A_2:204703_AT tetratricopeptide repeat domain 10 hs
HG-U133A:204703_AT tetratricopeptide repeat domain 10 hs
HG-FOCUS:204703_AT tetratricopeptide repeat domain 10 hs
HUGENEFL:U20362_AT tetratricopeptide repeat domain 10 hs
U133_X3P:G5729799_3P_AT tetratricopeptide repeat domain 10 hs
HG-U95AV2:34284_AT tetratricopeptide repeat domain 10 hs
HG-U95B:42080_AT Tetratricopeptide repeat domain 10 hs
HU35KSUBD:RC_AA192415_AT Tetratricopeptide repeat domain 10 hs
U133_X3P:HS2.384557.1.S1_3P_X_AT Tetratricopeptide repeat domain 10 hs
U133_X3P:HS2.384557.1.S1_3P_AT Tetratricopeptide repeat domain 10 hs
HG-U133_PLUS_2:1561121_AT Tetratricopeptide repeat domain 10 hs
HG-U133_PLUS_2:235895_AT Tetratricopeptide repeat domain 10 hs
HG-U133B:235895_AT Tetratricopeptide repeat domain 10 hs
HG-U95B:56791_AT Tetratricopeptide repeat domain 10 hs
HG-U95D:86822_AT Tetratricopeptide repeat domain 10 hs
HG-U95E:90873_AT Tetratricopeptide repeat domain 10 hs
U133_X3P:HS.251328.0.A1_3P_AT Tetratricopeptide repeat domain 10 hs
MU11KSUBA:L31959_S_AT tetratricopeptide repeat domain 10 mm
MG-U74AV2:100404_AT tetratricopeptide repeat domain 10 mm
MG-U74AV2:162392_R_AT tetratricopeptide repeat domain 10 mm
MOE430A:1448652_AT tetratricopeptide repeat domain 10 mm
MOUSE430A_2:1448652_AT tetratricopeptide repeat domain 10 mm
MOUSE430_2:1448652_AT tetratricopeptide repeat domain 10 mm
RAE230B:1384915_AT Tetratricopeptide repeat domain 10 (predicted) rn
RAT230_2:1384915_AT Tetratricopeptide repeat domain 10 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508511 OSMotic avoidance abnormal family member (osm-5) [Caenorhabditis elegans] gb|AAF60551.2| Osmotic avoidance abnormal protein 5 [Caenorhabditis elegans] gb|AAK01173.1| OSM-5 [Caenorhabditis elegans] 0.0
blast CAE58806 Hypothetical protein CBG02013 [Caenorhabditis briggsae] 0.0
blast AAH12250 Tg737 protein [Mus musculus] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 5.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 3.3E-6
Pfam IPR001440 EMBL-EBI TPR repeat 2.2E-4
Pfam IPR001440 EMBL-EBI TPR repeat 3.8E-4
Pfam IPR001440 EMBL-EBI TPR repeat 4.2E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.08
Sequence
Target Sequence 
>C. ELEGANS:188198_S_AT
aagctgaagatttctcctatgatgatcctgttgcaatatccagccgcccaaaaacaggca
cgcgcaaaactacaacagacaccaacattgatgattttggagactttgatgacagccttt
tgccagattgataatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTGAAGATTTCTCCTATGATGA 15 151 2290 Antisense
ATTTCTCCTATGATGATCCTGTTGC 150 17 2299 Antisense
TGATCCTGTTGCAATATCCAGCCGC 290 565 2312 Antisense
TATCCAGCCGCCCAAAAACAGGCAC 165 657 2326 Antisense
CCGCCCAAAAACAGGCACGCGCAAA 442 259 2333 Antisense
GGCACGCGCAAAACTACAACAGACA 204 535 2346 Antisense
ACTACAACAGACACCAACATTGATG 619 99 2358 Antisense
CAACATTGATGATTTTGGAGACTTT 145 189 2372 Antisense
GAGACTTTGATGACAGCCTTTTGCC 283 393 2389 Antisense
GATGACAGCCTTTTGCCAGATTGAT 588 411 2397 Antisense
ACAGCCTTTTGCCAGATTGATAATT 275 109 2401 Antisense
Sequence Source Affymetrix Proprietary Database