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[188197_at]

Description Y41G9A.1 /REP_DB=WormBase Gene ID /WP=CE28361 /GEN=osm-5 /TR=Q9N4Z9 /GB=AAF60551.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 30      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 211.8
(3)
A 		107.9
(-0.3)
A 		23.1
(-3)
A 		138.6
(0.7)
A 		189
B 241.3
(3)
A 		64.6
(-2.5)
A 		47.2
(-3)
A 		156.4
(0.4)
A 		194
C 207.9
(3)
A 		33.8
(-3)
A 		52.7
(-2.3)
A 		194.5
(2.5)
A 		174
avr 220.3
(3) 		68.8
(-2.1) 		41
(-3) 		163.2
(1.1) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 161.1
(3)
A 		148.6
(2.4)
A 		110.8
(0.6)
A 		79
(-1)
A 		37
(-3)
A 		128
(1.4)
A 		124
B 151.3
(3)
A 		88.3
(-0.9)
A 		79.9
(-1.4)
A 		54.2
(-3)
A 		66.3
(-2.3)
A 		100.3
(-0.2)
A 		97
C 135
(3)
A 		127.2
(2.5)
A 		122.2
(2.2)
A 		86.6
(0)
A 		37.2
(-3)
A 		105
(1.2)
A 		98
avr 149.1
(3) 		121.4
(1.4) 		104.3
(0.4) 		73.3
(-1.4) 		46.8
(-3) 		111.1
(0.8) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 77.1
(3)
A 		23.4
(-1.5)
A 		6
(-3)
A 		20.3
(-1.8)
A 		71
B 77
(3)
A 		16
(-2.5)
A 		10.9
(-3)
A 		33.3
(-1)
A 		66
C 68.8
(3)
A 		9.7
(-3)
A 		18.4
(-2.1)
A 		32.8
(-0.7)
A 		59
avr 74.3
(3) 		16.4
(-2.6) 		11.8
(-3) 		28.8
(-1.4) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 29.7
(-0.3)
A 		52.9
(3)
A 		24.1
(-1.1)
A 		20
(-1.7)
A 		11.2
(-3)
A 		31.2
(-0.1)
A 		42
B 52.7
(3)
A 		29.4
(-0.7)
A 		19.4
(-2.2)
A 		14.4
(-3)
A 		27
(-1)
A 		37.4
(0.6)
A 		38
C 50
(3)
A 		38.8
(1.2)
A 		31.1
(0)
A 		17.4
(-2.1)
A 		12
(-3)
A 		35.2
(0.7)
A 		38
avr 44.1
(3) 		40.4
(2.2) 		24.9
(-1.2) 		17.3
(-2.9) 		16.7
(-3) 		34.6
(0.9) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18513
Sequence Type Exemplar sequence
Representative Public ID Y41G9A.1 NCBI
Target Description Y41G9A.1 /REP_DB=WormBase Gene ID /WP=CE28361 /GEN=osm-5 /TR=Q9N4Z9 /GB=AAF60551.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076110 NCBI Caenorhabditis elegans OSMotic avoidance abnormal family member (osm-5) (osm-5) mRNA, complete cds. 11/11 A 
SNAP00000022736 ENSEMBL cdna:SNAP chromosome:CEL140:X:2984269:2990013:1 11/11 None
GENEFINDER00000022743 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2984269:2991369:1 11/11 None
Y41G9A.1 ENSEMBL cdna:known chromosome:CEL140:X:2984269:2991366:1 gene:Y41G9A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2984268-2991421(+) 99.12 100.0
Public Domain and Genome References
Gene Title
Gene Symbol osm-5
Ensembl Y41G9A.1
Entrez Gene 180585 Entrez gene
SwissProt Q9N4Z9 EMBL-EBI
WormBase CE28361 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585636_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CANINE_2:CFA.9556.1.A1_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CANINE_2:CFA.9556.1.A1_S_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CANINE_2:CFAAFFX.11770.1.S1_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CANINE_2:CFAAFFX.11777.1.S1_S_AT similar to Tetratricopeptide repeat protein 10 (TPR repeat protein 10) (Recessive polycystic kidney disease protein Tg737) (TgN(Imorpk)737Rpw) cfa
CHICKEN:GGA.15233.1.S1_S_AT tetratricopeptide repeat domain 10 gga
CHICKEN:GGAAFFX.10981.1.S1_S_AT tetratricopeptide repeat domain 10 gga
CHICKEN:GGAAFFX.25177.1.S1_AT tetratricopeptide repeat domain 10 gga
HG-U133_PLUS_2:204703_AT tetratricopeptide repeat domain 10 hs
HG-U133A_2:204703_AT tetratricopeptide repeat domain 10 hs
HG-U133A:204703_AT tetratricopeptide repeat domain 10 hs
HG-FOCUS:204703_AT tetratricopeptide repeat domain 10 hs
HUGENEFL:U20362_AT tetratricopeptide repeat domain 10 hs
U133_X3P:G5729799_3P_AT tetratricopeptide repeat domain 10 hs
HG-U95AV2:34284_AT tetratricopeptide repeat domain 10 hs
HG-U95B:42080_AT Tetratricopeptide repeat domain 10 hs
HU35KSUBD:RC_AA192415_AT Tetratricopeptide repeat domain 10 hs
U133_X3P:HS2.384557.1.S1_3P_X_AT Tetratricopeptide repeat domain 10 hs
U133_X3P:HS2.384557.1.S1_3P_AT Tetratricopeptide repeat domain 10 hs
HG-U133_PLUS_2:1561121_AT Tetratricopeptide repeat domain 10 hs
HG-U133_PLUS_2:235895_AT Tetratricopeptide repeat domain 10 hs
HG-U133B:235895_AT Tetratricopeptide repeat domain 10 hs
HG-U95B:56791_AT Tetratricopeptide repeat domain 10 hs
HG-U95D:86822_AT Tetratricopeptide repeat domain 10 hs
HG-U95E:90873_AT Tetratricopeptide repeat domain 10 hs
U133_X3P:HS.251328.0.A1_3P_AT Tetratricopeptide repeat domain 10 hs
MU11KSUBA:L31959_S_AT tetratricopeptide repeat domain 10 mm
MG-U74AV2:100404_AT tetratricopeptide repeat domain 10 mm
MG-U74AV2:162392_R_AT tetratricopeptide repeat domain 10 mm
MOE430A:1448652_AT tetratricopeptide repeat domain 10 mm
MOUSE430A_2:1448652_AT tetratricopeptide repeat domain 10 mm
MOUSE430_2:1448652_AT tetratricopeptide repeat domain 10 mm
RAE230B:1384915_AT Tetratricopeptide repeat domain 10 (predicted) rn
RAT230_2:1384915_AT Tetratricopeptide repeat domain 10 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508511 OSMotic avoidance abnormal family member (osm-5) [Caenorhabditis elegans] gb|AAF60551.2| Osmotic avoidance abnormal protein 5 [Caenorhabditis elegans] gb|AAK01173.1| OSM-5 [Caenorhabditis elegans] 0.0
blast CAE58806 Hypothetical protein CBG02013 [Caenorhabditis briggsae] 0.0
blast AAH12250 Tg737 protein [Mus musculus] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 5.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 3.3E-6
Pfam IPR001440 EMBL-EBI TPR repeat 2.2E-4
Pfam IPR001440 EMBL-EBI TPR repeat 3.8E-4
Pfam IPR001440 EMBL-EBI TPR repeat 4.2E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.08
Pfam IPR001440 EMBL-EBI TPR repeat 8.2E-6
Pfam IPR001440 EMBL-EBI TPR repeat 3.3E-6
Pfam IPR001440 EMBL-EBI TPR repeat 2.2E-4
Pfam IPR001440 EMBL-EBI TPR repeat 3.8E-4
Pfam IPR001440 EMBL-EBI TPR repeat 4.2E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.08
Sequence
Target Sequence 
>C. ELEGANS:188197_AT
aactacttggagaaggctgccctgatgcagccaaacgtttcaaaatggcaaatgatgata
gccagttgcctacgacggacaggcaattaccaaagagctttcgagctttatcgtcagatt
catcgcaagttccctcaagacctcgactgcctcaaattcttggttcgaattgccggtgat
cttggaatgacggaatacaaggagtacaaggataaactggaaaaggctgaaaaaatcaat
caactccgtctacaacgggaaagtgattcaagccaaggaaaacgtcactctgcaaattca
acgcattcccttcccccatccggcctgaccggtttgggatcggggtcaggtggttcgagt
ggtggtggcacccgtcaatacagtgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTACTTGGAGAAGGCTGCCCTGA 157 141 1900 Antisense
CTGCCCTGATGCAGCCAAACGTTTC 400 235 1916 Antisense
TGATGATAGCCAGTTGCCTACGACG 439 555 1952 Antisense
GAGCTTTCGAGCTTTATCGTCAGAT 184 389 1994 Antisense
ACCTCGACTGCCTCAAATTCTTGGT 699 87 2039 Antisense
TTGGTTCGAATTGCCGGTGATCTTG 655 695 2059 Antisense
AAAAATCAATCAACTCCGTCTACAA 331 129 2130 Antisense
AGCCAAGGAAAACGTCACTCTGCAA 576 81 2170 Antisense
CCATCCGGCCTGACCGGTTTGGGAT 417 269 2215 Antisense
GTCAGGTGGTTCGAGTGGTGGTGGC 89 465 2244 Antisense
GGTGGCACCCGTCAATACAGTGCAC 389 499 2263 Antisense
Sequence Source Affymetrix Proprietary Database