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[188195_at]

Description C23H5.2 /REP_DB=WormBase Gene ID /WP=CE17437 /TR=O61831 /GB=AAC17533.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=globin
Cluster 6grp_total > 38      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 105.7
(-0.7)
P 		106.7
(-0.6)
A 		67.5
(-3)
A 		165.1
(3)
M 		98
B 141.9
(3)
P 		107.5
(0.7)
M 		52.2
(-3)
A 		125.2
(1.9)
P 		90
C 191
(3)
P 		78.7
(-3)
M 		79.8
(-2.9)
A 		190.5
(3)
P 		112
avr 146.2
(2.1) 		97.6
(-1) 		66.5
(-3) 		160.3
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 97
(2.9)
P 		98.6
(3)
P 		29.5
(-3)
A 		61.2
(-0.2)
A 		62.6
(-0.1)
A 		95.8
(2.8)
P 		69
B 171.3
(3)
P 		106.3
(0.3)
P 		42.9
(-2.4)
A 		29
(-3)
A 		61.6
(-1.6)
A 		151
(2.1)
P 		142
C 126
(3)
P 		102.5
(1.4)
P 		60.6
(-1.4)
A 		37
(-3)
A 		51.8
(-2)
A 		117.4
(2.4)
P 		89
avr 131.4
(3) 		102.5
(1.1) 		44.3
(-2.9) 		42.4
(-3) 		58.7
(-1.9) 		121.4
(2.3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 38.5
(3)
P 		23.2
(-1.4)
A 		17.7
(-3)
A 		24.2
(-1.1)
M 		21
B 45.2
(3)
P 		26.5
(-0.4)
M 		12.1
(-3)
A 		26.7
(-0.4)
P 		33
C 63.2
(3)
P 		22.6
(-3)
M 		27.8
(-2.2)
A 		32.1
(-1.6)
P 		41
avr 49
(3) 		24.1
(-2) 		19.2
(-3) 		27.7
(-1.3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 17.9
(-0.6)
P 		35.1
(3)
P 		6.4
(-3)
A 		15.5
(-1.1)
A 		18.9
(-0.4)
A 		23.3
(0.5)
P 		29
B 59.6
(3)
P 		35.4
(0.2)
P 		10.4
(-2.7)
A 		7.7
(-3)
A 		25
(-1)
A 		56.3
(2.6)
P 		52
C 46.7
(3)
P 		31.3
(0.6)
P 		15.4
(-1.8)
A 		7.4
(-3)
A 		16.8
(-1.6)
A 		39.3
(1.9)
P 		39
avr 41.4
(3) 		33.9
(1.6) 		10.7
(-2.9) 		10.2
(-3) 		20.2
(-1.1) 		39.6
(2.7) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11054
Sequence Type Exemplar sequence
Representative Public ID C23H5.2 NCBI
Target Description C23H5.2 /REP_DB=WormBase Gene ID /WP=CE17437 /TR=O61831 /GB=AAC17533.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=globin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026155 NCBI Caenorhabditis elegans C23H5.2b (globin) mRNA, complete cds. 11/11 None
GENEFINDER00000034542 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2122796:2126037:1 11/11 None
C23H5.2b ENSEMBL cdna:known chromosome:CEL140:IV:2122796:2126037:1 gene:C23H5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026154 8/11 Cross Hyb Matching Probes None
SNAP00000034537 7/11 Cross Hyb Matching Probes None
C23H5.2a 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177008 2 1 NM_001026155 188195_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2122801-2126043(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C23H5.2
Entrez Gene 177008 Entrez gene
SwissProt Q7YZV1 EMBL-EBI
WormBase CE17437 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15671 oxygen transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAP82661 Hypothetical protein C23H5.2 [Caenorhabditis elegans] ref|NP_001021326.1| C23H5.2b [Caenorhabditis elegans] pir||T33129 hypothetical protein C23H5.2 - Caenorhabditis elegans 1.0E-142
blast CAE65561 Hypothetical protein CBG10551 [Caenorhabditis briggsae] 1.0E-126
blast NP_001021325 C23H5.2a [Caenorhabditis elegans] 4.0E-58
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 1.99999994947575E-5
Pfam IPR000971 EMBL-EBI Globin 2.6E-13
Sequence
Target Sequence 
>C. ELEGANS:188195_AT
tccggaaacgcttaatccactttgcgacaacttggggagggtacatggtagattgagtga
atcacgaggcttccgaactcaccactggggcgttttcatcgaatgcacactttttcattt
tcgcaaggttttggggcaggacacgtatttccatcgtatggacgctcttgataaggtgat
aatcaactggcgaatcatcatccgactcctaatcaaacaaatgaaacgtggcttcaacac
ggacatcaagaaccgccaagcatctcgtgagctcgaggagagcaacaaagcctcgacgag
cagttcaccgatcagtcaggagtcatgcagtcttggtacgggtcttagaaagaattcgag
gcagttgatgtttttagctgtgccgggagccgccgctgcgacaatgtcacagtcattgac
actgccggctatcaataataacaactatcgcaagggaagtgatagtcggttatcaaccgt
ctccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGGAAACGCTTAATCCACTTTGC 653 585 258 Antisense
ACCACTGGGGCGTTTTCATCGAATG 604 85 338 Antisense
GGCAGGACACGTATTTCCATCGTAT 66 535 392 Antisense
CAACTGGCGAATCATCATCCGACTC 416 187 441 Antisense
CCGCCAAGCATCTCGTGAGCTCGAG 561 261 510 Antisense
AAAGCCTCGACGAGCAGTTCACCGA 334 125 544 Antisense
GTTCACCGATCAGTCAGGAGTCATG 314 445 560 Antisense
GAGTCATGCAGTCTTGGTACGGGTC 534 389 577 Antisense
GCCGCTGCGACAATGTCACAGTCAT 373 285 649 Antisense
TCACAGTCATTGACACTGCCGGCTA 642 627 664 Antisense
TAGTCGGTTATCAACCGTCTCCGCA 154 653 720 Antisense
Sequence Source Affymetrix Proprietary Database