[Home] | [Total List]

[188193_at]

Description F18A11.4_rc /REP_DB=WormBase Gene ID /WP=CE20689 /TR=Q9XTB1 /GB=CAB04136.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 46      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 18.3
(-2.5)
A 		14.9
(-3)
A 		52.8
(3)
A 		20.8
(-2.1)
A 		38
B 34
(1.9)
A 		39.7
(3)
A 		9.4
(-3)
A 		31.6
(1.4)
A 		30
C 35.9
(2)
A 		41.1
(3)
A 		9.7
(-3)
A 		30.5
(1)
A 		31
avr 29.4
(1.1) 		31.9
(3) 		24
(-3) 		27.6
(-0.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 63.8
(3)
A 		4.3
(-2.8)
A 		2.5
(-3)
A 		6
(-2.7)
A 		4.8
(-2.8)
A 		57.7
(2.4)
A 		61
B 3.3
(-2.8)
A 		23.4
(0.8)
A 		35.3
(3)
A 		31.2
(2.3)
A 		2.4
(-3)
A 		21.3
(0.4)
A 		33
C 17.4
(-2.2)
A 		48.6
(3)
A 		14.8
(-2.6)
A 		46.6
(2.7)
A 		12.5
(-3)
A 		20.6
(-1.7)
A 		36
avr 28.2
(1.9) 		25.4
(1.2) 		17.5
(-0.5) 		27.9
(1.8) 		6.6
(-3) 		33.2
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.7
(-0.9)
A 		3.2
(-2.9)
A 		13.8
(3)
A 		3
(-3)
A 		11
B 10.8
(3)
A 		9.8
(2.3)
A 		2.2
(-3)
A 		6.7
(0.1)
A 		9
C 11.9
(3)
A 		11.8
(2.9)
A 		3.4
(-3)
A 		5.1
(-1.8)
A 		9
avr 9.8
(3) 		8.3
(1.2) 		6.5
(-1) 		4.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 11.8
(2)
A 		1.5
(-2.6)
A 		0.5
(-3)
A 		1.5
(-2.6)
A 		1.4
(-2.6)
A 		14
(3)
A 		14
B 1.1
(-2.9)
A 		7.8
(2.4)
A 		8.6
(3)
A 		8.3
(2.8)
A 		1
(-3)
A 		7.9
(2.4)
A 		8
C 6.4
(-1.6)
A 		14.8
(3)
A 		3.8
(-3)
A 		9.4
(0.1)
A 		4
(-2.9)
A 		6.9
(-1.3)
A 		11
avr 6.4
(0.4) 		8
(1.7) 		4.3
(-1.2) 		6.4
(0.4) 		2.1
(-3) 		9.6
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28108
Sequence Type Exemplar sequence
Representative Public ID F18A11.4 NCBI
Target Description F18A11.4_rc /REP_DB=WormBase Gene ID /WP=CE20689 /TR=Q9XTB1 /GB=CAB04136.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F18A11.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F18A11.4 F18A11.4_rc /REP_DB=WormBase Gene ID /WP=CE20689 /TR=Q9XTB1 /GB=CAB04136.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064369 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13022850-13025526(+) 100.0 100.0
Public Domain and Genome References
Ensembl F18A11.4
Sequence
Target Sequence 
>C. ELEGANS:188193_AT
gtgctccattcgaagtcgtcggattcgtcgtcgtcgtcgccactgccgatgcggttttgc
ttcgttgcggaagaactggcggttgaggcgggaacggagatcgtggatgcagttttggag
tctctccggtgaatgttttcagttgtggagcactttcactatatggaactggagctggag
acggaacgttattcctttccgataatgagagagatgtgtcggtagacgacgccgtggaaa
gatgattatttccatttgtcagtggacgagcagaagaagatgaagctgacactgatgtag
atggggaagttgcggaaccattactacactgcaaattcctcaaatgttccgtgacttgtc
cggtcaactgaacgtccacatcatcgtcatcgctattcgtgaaaacactattcgtcgtca
tgaatttcgtcttctcgttctccttcattgattgtgcgtagaacttcaacgcagtcacca
ccgcgttcggatccttcttctgatcggcaagacgatgcactgtgttatatggctgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTCCATTCGAAGTCGTCGGATT 233 479 195 Antisense
GGATGCAGTTTTGGAGTCTCTCCGG 661 513 299 Antisense
GAGTCTCTCCGGTGAATGTTTTCAG 164 401 312 Antisense
AGTTGCGGAACCATTACTACACTGC 195 59 502 Antisense
GACTTGTCCGGTCAACTGAACGTCC 625 367 547 Antisense
CCACATCATCGTCATCGCTATTCGT 356 275 570 Antisense
CGTCGTCATGAATTTCGTCTTCTCG 679 245 607 Antisense
TCTCGTTCTCCTTCATTGATTGTGC 598 611 627 Antisense
CGTAGAACTTCAACGCAGTCACCAC 475 247 651 Antisense
GGATCCTTCTTCTGATCGGCAAGAC 452 513 683 Antisense
GATGCACTGTGTTATATGGCTGACT 441 413 708 Antisense
Sequence Source Affymetrix Proprietary Database