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[188192_at]

Description T07H8.6 /REP_DB=WormBase Gene ID /WP=CE18227 /GEN=ptr-15 /TR=O61894 /GB=AAC17680.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_high_8_8 > 39      6grp_highest_nonorm > 71      6grp_total > 71      4grp_total > 40      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 83.8
(-3)
P 		231.1
(0.5)
P 		334.3
(3)
P 		226.2
(0.4)
P 		251
B 109.2
(-3)
P 		215.6
(-0.1)
P 		329.2
(3)
P 		147.3
(-2)
P 		220
C 100.5
(-3)
M 		247.4
(1.4)
P 		303.1
(3)
P 		281.1
(2.3)
P 		203
avr 97.8
(-3) 		231.4
(0.6) 		322.2
(3) 		218.2
(0.2) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 572
1 2 3 4 5 6 range
A 320.3
(-0.3)
P 		245.4
(-1.4)
P 		412
(1.1)
P 		536.7
(3)
P 		380
(0.6)
P 		140.2
(-3)
P 		397
B 343.9
(-0.5)
P 		324.2
(-0.7)
P 		337.8
(-0.5)
P 		673
(3)
P 		339
(-0.5)
P 		100.9
(-3)
P 		572
C 326.5
(0.1)
P 		313.9
(-0.2)
P 		319
(-0.1)
P 		489
(3)
P 		319.5
(-0.1)
P 		156.8
(-3)
P 		332
avr 330.2
(-0.3) 		294.5
(-0.8) 		356.3
(0.1) 		566.2
(3) 		346.2
(-0) 		132.6
(-3) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 30.5
(-3)
P 		50.2
(-0.9)
P 		87.4
(3)
P 		33.1
(-2.7)
P 		57
B 34.8
(-2.5)
P 		53.3
(-0.1)
P 		76.3
(3)
P 		31.4
(-3)
P 		45
C 33.3
(-3)
M 		71.1
(0.1)
P 		105.7
(3)
P 		47.4
(-1.8)
P 		72
avr 32.9
(-3) 		58.2
(-0.3) 		89.8
(3) 		37.3
(-2.5) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 59.1
(-1.5)
P 		87.3
(0.1)
P 		89.7
(0.3)
P 		136.1
(3)
P 		114.7
(1.7)
P 		34.1
(-3)
P 		102
B 119.7
(0.5)
P 		107.9
(-0)
P 		82
(-1.1)
P 		178.3
(3)
P 		137.7
(1.3)
P 		37.6
(-3)
P 		141
C 121
(3)
P 		95.8
(0.8)
P 		81.2
(-0.5)
P 		98.3
(1)
P 		103.4
(1.5)
P 		52.5
(-3)
P 		69
avr 99.9
(0.6) 		97
(0.5) 		84.3
(-0.3) 		137.6
(3) 		118.6
(1.8) 		41.4
(-3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12305
Sequence Type Exemplar sequence
Representative Public ID T07H8.6 NCBI
Target Description T07H8.6 /REP_DB=WormBase Gene ID /WP=CE18227 /GEN=ptr-15 /TR=O61894 /GB=AAC17680.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072359 NCBI Caenorhabditis elegans PaTched Related family member (ptr-15) (ptr-15) mRNA, complete cds. 11/11 None
SNAP00000037162 ENSEMBL cdna:SNAP chromosome:CEL140:V:6969058:6972579:-1 11/11 None
GENEFINDER00000037169 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6969058:6972579:-1 11/11 None
T07H8.6 ENSEMBL cdna:known chromosome:CEL140:V:6969005:6972579:-1 gene:T07H8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6969058-6972580(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ptr-15
Ensembl T07H8.6
Entrez Gene 191749 Entrez gene
SwissProt O61894 EMBL-EBI
WormBase CE18227 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8158 hedgehog receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504760 PaTched Related family member (ptr-15) [Caenorhabditis elegans] gb|AAC17680.1| Patched related family protein 15 [Caenorhabditis elegans] 0.0
blast CAE71975 Hypothetical protein CBG19049 [Caenorhabditis briggsae] 0.0
blast CAE72114 Hypothetical protein CBG19208 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Pfam IPR003392 EMBL-EBI Patched family 1.9E-39
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504760.1 11 33-52,261-283,296-318,323-345,365-387,397-419,676-698,702-724,733-752,772-794,807-829
T07H8.6 11 33-52,261-283,296-318,323-345,365-387,397-419,676-698,702-724,733-752,772-794,807-829
SNAP00000037162 11 33-52,206-228,241-263,268-290,310-332,342-364,621-643,647-669,678-697,717-739,752-774
GENEFINDER00000037169 11 33-52,261-283,296-318,323-345,365-387,397-419,676-698,702-724,733-752,772-794,807-829
Sequence
Target Sequence 
>C. ELEGANS:188192_AT
ggaacattcgaacatcacttctcctaacatggcgtaacataacatcaagctatcccgaat
tcgacgctctcgtctttgacgagaacaacttttacagtgatcaaatgctggaattacagt
cgactattctttcttctctgggaacagccatcattcttttgagtgctatttgtatcatgt
tcattgcggaatcctacattgtattctgggtcgtatgcactctcatttctatggatatcg
gaacagcaggactattatctttgtggggagctgatttggatcctatgactgtcgttaata
ttttaatgtctatcggacaatgtattgattttgcaacacacgtgggaattcgaatctacc
gttctgaatactctgatcctgatgaaagaatacgagacgcgatgggagcaattggatggc
ccgttgttcaagcaggaacatctacgttacttgccattgtcgtgatgcttatggttcctt
catcggctgttcgaatgtttgcccgtactagtgttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACATTCGAACATCACTTCTCCT 393 529 1919 Antisense
ACATCAAGCTATCCCGAATTCGACG 409 103 1960 Antisense
TTACAGTCGACTATTCTTTCTTCTC 653 683 2032 Antisense
GAACAGCCATCATTCTTTTGAGTGC 391 351 2060 Antisense
TTGTATTCTGGGTCGTATGCACTCT 311 705 2117 Antisense
TACCGTTCTGAATACTCTGATCCTG 543 649 2275 Antisense
GCAATTGGATGGCCCGTTGTTCAAG 619 323 2326 Antisense
GGAACATCTACGTTACTTGCCATTG 310 529 2353 Antisense
TTGTCGTGATGCTTATGGTTCCTTC 256 707 2375 Antisense
GTTCCTTCATCGGCTGTTCGAATGT 490 441 2392 Antisense
GAATGTTTGCCCGTACTAGTGTTCT 79 319 2411 Antisense
Sequence Source Affymetrix Proprietary Database