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[188191_at]

Description T08B2.2_rc /REP_DB=WormBase Gene ID /WP=CE17221 /TR=Q9GYS2 /GB=AAG00021.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 04      4grp_total > 04      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 37.1
(-0.1)
A 		17.9
(-3)
A 		20.5
(-2.6)
A 		57.9
(3)
A 		40
B 16.7
(-0.8)
A 		32.4
(2.9)
A 		7.6
(-3)
A 		32.9
(3)
A 		25
C 24.6
(0.4)
A 		2.7
(-3)
A 		27.9
(0.9)
A 		41.2
(3)
A 		39
avr 26.1
(-1.1) 		17.7
(-3) 		18.7
(-2.8) 		44
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 73.7
(3)
A 		29
(-0.9)
A 		5.1
(-3)
A 		5.9
(-2.9)
A 		22
(-1.5)
A 		4.9
(-3)
A 		69
B 49.1
(3)
A 		26
(0)
A 		34.4
(1.1)
A 		31.4
(0.7)
A 		37.3
(1.5)
A 		2.7
(-3)
A 		46
C 4.4
(-3)
A 		38.7
(3)
A 		8.5
(-2.3)
A 		36.2
(2.6)
A 		4.5
(-3)
A 		7.8
(-2.4)
A 		34
avr 42.4
(3) 		31.2
(1.2) 		16
(-1.2) 		24.5
(0.1) 		21.3
(-0.4) 		5.1
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.5
(3)
A 		3.9
(-3)
A 		5.4
(-2.1)
A 		8.5
(-0.1)
A 		10
B 5.3
(0.4)
A 		8
(3)
A 		1.8
(-3)
A 		7
(2)
A 		6
C 8.1
(1.9)
A 		0.8
(-3)
A 		9.7
(3)
A 		7
(1.2)
A 		9
avr 9
(3) 		4.2
(-3) 		5.6
(-1.3) 		7.5
(1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 13.6
(3)
A 		10.3
(1.4)
A 		1.1
(-3)
A 		1.5
(-2.8)
A 		6.6
(-0.4)
A 		1.2
(-3)
A 		13
B 17.1
(3)
A 		8.7
(-0.1)
A 		8.3
(-0.3)
A 		8.3
(-0.3)
A 		15.2
(2.3)
A 		1
(-3)
A 		16
C 1.6
(-2.9)
A 		11.8
(3)
A 		2.2
(-2.5)
A 		7.3
(0.4)
A 		1.4
(-3)
A 		2.6
(-2.3)
A 		10
avr 10.8
(3) 		10.3
(2.7) 		3.9
(-1.5) 		5.7
(-0.3) 		7.7
(1) 		1.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28105
Sequence Type Exemplar sequence
Representative Public ID T08B2.2 NCBI
Target Description T08B2.2_rc /REP_DB=WormBase Gene ID /WP=CE17221 /TR=Q9GYS2 /GB=AAG00021.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T08B2.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T08B2.2 T08B2.2_rc /REP_DB=WormBase Gene ID /WP=CE17221 /TR=Q9GYS2 /GB=AAG00021.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059399 11/11 Negative Strand Matching Probes A 
GENEFINDER00000035014 11/11 Negative Strand Matching Probes None
SNAP00000035009 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6240840-6242344(-) 100.0 100.0
Public Domain and Genome References
Ensembl T08B2.2
Sequence
Target Sequence 
>C. ELEGANS:188191_AT
gcctcttgtattcatcattttcattacaataagaccaggttctccttcttcaccacctat
tcctcgtttcccaggagttccttctcttcctgcagccccaactgatccaattactccaga
ttctccattcgggcctggggggccaatgaggcccggcggtcctggaataccatcagatcc
ttccatacctggatctcctggtggtccagcaggacacaaaatacagtgctccgtcattaa
ttccatataattatagtctcttcccggaagcccgtcgaatcccggttcaccatctaatcc
aggttttccaggtcgacctggagggcctgatgggcattctggtggttttattgaaggtga
tgatgggaatgcaacaagataatctttttcgctttgacgacgagatttcttgcgaatttt
tcgtttttctctggatttcaatgaaatcagtacgacttgtagatcattccagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCTTGTATTCATCATTTTCATT 26 283 349 Antisense
CAATAAGACCAGGTTCTCCTTCTTC 350 181 375 Antisense
AACTGATCCAATTACTCCAGATTCT 42 143 448 Antisense
TCCATTCGGGCCTGGGGGGCCAATG 229 1 472 Antisense
GGCGGTCCTGGAATACCATCAGATC 373 541 503 Antisense
TACAGTGCTCCGTCATTAATTCCAT 136 645 570 Antisense
ATAATTATAGTCTCTTCCCGGAAGC 497 1 595 Antisense
TCTAATCCAGGTTTTCCAGGTCGAC 514 613 641 Antisense
GGAGGGCCTGATGGGCATTCTGGTG 169 517 668 Antisense
TTTTCGTTTTTCTCTGGATTTCAAT 622 673 766 Antisense
GTACGACTTGTAGATCATTCCAGGA 313 457 798 Antisense
Sequence Source Affymetrix Proprietary Database