[Home] | [Total List]

[188190_at] ATPase

Description W09D10.2 /REP_DB=WormBase Gene ID /WP=CE16563 /TR=O18182 /GB=CAB07859.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 41      6grp_total > 04      4grp_total > 31      6grp_highest_sub > De      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 626
1 2 3 4 range
A 943.9
(3)
P 		330
(-2.9)
P 		317.8
(-3)
P 		681.7
(0.5)
P 		626
B 893.8
(3)
P 		394.6
(-2.2)
P 		319.3
(-3)
P 		587.5
(-0.2)
P 		575
C 835.4
(3)
P 		450.6
(-2)
P 		370
(-3)
P 		667.9
(0.8)
P 		465
avr 891
(3) 		391.7
(-2.4) 		335.7
(-3) 		645.7
(0.3) 		555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 742.6
(2.8)
P 		752.7
(3)
P 		567.9
(-1.4)
P 		562.1
(-1.5)
P 		584
(-1)
P 		497.9
(-3)
P 		255
B 845.9
(3)
P 		776
(1.8)
P 		529.4
(-2.5)
P 		698.3
(0.5)
P 		596.6
(-1.3)
P 		497.5
(-3)
P 		348
C 755.9
(2.8)
P 		764.6
(3)
P 		691.3
(1.4)
P 		575.3
(-1.1)
P 		594.7
(-0.7)
P 		486.3
(-3)
P 		278
avr 781.5
(3) 		764.4
(2.6) 		596.2
(-0.9) 		611.9
(-0.5) 		591.8
(-1) 		493.9
(-3) 		288
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 343.7
(3)
P 		71.6
(-3)
P 		83.1
(-2.7)
P 		99.8
(-2.4)
P 		272
B 285
(3)
P 		97.5
(-2.3)
P 		74
(-3)
P 		125.2
(-1.5)
P 		211
C 276.5
(3)
P 		129.5
(-2.4)
P 		129
(-2.4)
P 		112.6
(-3)
P 		164
avr 301.7
(3) 		99.5
(-2.9) 		95.4
(-3) 		112.5
(-2.5) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 136.9
(-2.4)
P 		267.7
(3)
P 		123.7
(-2.9)
P 		142.6
(-2.1)
P 		176.2
(-0.7)
P 		121.2
(-3)
P 		147
B 294.3
(3)
P 		258.3
(1.7)
P 		128.5
(-3)
P 		184.9
(-1)
P 		242.4
(1.1)
P 		185.5
(-0.9)
P 		166
C 280.2
(3)
P 		233.3
(1.3)
P 		175.9
(-0.8)
P 		115.7
(-3)
P 		192.4
(-0.2)
P 		162.8
(-1.3)
P 		165
avr 237.1
(2.1) 		253.1
(3) 		142.7
(-3) 		147.7
(-2.7) 		203.7
(0.3) 		156.5
(-2.3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188190_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7371
Sequence Type Exemplar sequence
Representative Public ID W09D10.2 NCBI
Target Description W09D10.2 /REP_DB=WormBase Gene ID /WP=CE16563 /TR=O18182 /GB=CAB07859.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066962(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066962 NCBI Caenorhabditis elegans W09D10.2 (ATPase) mRNA, complete cds. 10/11 None
SNAP00000014514 ENSEMBL cdna:SNAP chromosome:CEL140:III:10722445:10730051:-1 10/11 None
GENEFINDER00000014534 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10722445:10730901:-1 10/11 None
W09D10.2 ENSEMBL cdna:known chromosome:CEL140:III:10722035:10729320:-1 gene:W09D10.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10722814-10729316(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase
Gene Symbol tat-3
Ensembl W09D10.2
Entrez Gene 176498 Entrez gene
SwissProt O18182 EMBL-EBI
WormBase CE32952 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.15944.1.A1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) cfa
CANINE_2:CFAAFFX.15806.1.S1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) cfa
DROSOPHILA_2:1633424_AT dm
DROSOPHILA_2:1629658_AT dm
DROSOPHILA_2:1629283_AT dm
DROSGENOME1:153232_AT dm
DROSGENOME1:146089_AT dm
CHICKEN:GGAAFFX.10727.2.S1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.3.S1_S_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.5.S1_S_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.8.S1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.9.S1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.9.S1_S_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
HG-U133_PLUS_2:214255_AT ATPase, Class V, type 10A hs
HG-U133A_2:214255_AT ATPase, Class V, type 10A hs
HG-U133A:214255_AT ATPase, Class V, type 10A hs
HG-U133_PLUS_2:214256_AT ATPase, Class V, type 10A hs
HG-U133A_2:214256_AT ATPase, Class V, type 10A hs
HG-U133A:214256_AT ATPase, Class V, type 10A hs
HU35KSUBC:RC_AA348821_AT ATPase, Class V, type 10A hs
U133_X3P:HS2.407513.1.S1_3P_S_AT ATPase, Class V, type 10A hs
U133_X3P:HS2.407513.1.S1_3P_AT ATPase, Class V, type 10A hs
U133_X3P:HS.44697.0.S2_3P_AT ATPase, Class V, type 10A hs
U133_X3P:HS.44697.0.S1_3P_AT ATPase, Class V, type 10A hs
U133_X3P:1568743_3P_AT ATPase, Class V, type 10A hs
HG-U133_PLUS_2:1568743_AT ATPase, Class V, type 10A hs
HG-U95AV2:39961_AT ATPase, Class V, type 10A hs
HG-U95D:76829_AT ATPase, Class V, type 10A hs
HG-U95C:53042_AT ATPase, Class V, type 10A hs
MOE430A:1452013_AT ATPase, class V, type 10A mm
MOUSE430A_2:1452013_AT ATPase, class V, type 10A mm
MOUSE430_2:1452013_AT ATPase, class V, type 10A mm
MOUSE430_2:1447272_S_AT ATPase, class V, type 10A mm
MOE430B:1447272_S_AT ATPase, class V, type 10A mm
MOUSE430_2:1447273_X_AT ATPase, class V, type 10A mm
MOE430B:1447273_X_AT ATPase, class V, type 10A mm
MG-U74BV2:110111_AT ATPase, class V, type 10A (Atp10a), mRNA mm
MU11KSUBB:MSA.33916.0_S_AT ATPase, class V, type 10A (Atp10a), mRNA mm
MU19KSUBA:TC17164_AT ATPase, class V, type 10A (Atp10a), mRNA mm
RG-U34B:RC_AA955993_AT ATPase, class V, type 10A (predicted) rn
RAE230B:1384556_AT ATPase, class V, type 10A (predicted) rn
RAT230_2:1384556_AT ATPase, class V, type 10A (predicted) rn
RAE230B:1385361_AT ATPase, class V, type 10A (predicted) rn
RAT230_2:1385361_AT ATPase, class V, type 10A (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
15662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism inferred from electronic annotation QuickGO AmiGO
16887 ATPase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07859 Hypothetical protein W09D10.2 [Caenorhabditis elegans] ref|NP_499363.2| W09D10.2 [Caenorhabditis elegans] 0.0
blast CAE71412 Hypothetical protein CBG18322 [Caenorhabditis briggsae] 0.0
blast EAL39256 ENSANGP00000026375 [Anopheles gambiae str. PEST] ref|XP_553923.1| ENSANGP00000026375 [Anopheles gambiae str. PEST] 0.0
Protein Families
Method ID Description E-Value
ec A10A_HUMAN (O60312) Potential phospholipid-transporting ATPase VA (EC 3.6.3.1) (ATPVA) (Aminophospholipid translocase VA) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 2.0E-5
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 2.0E-5
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.2E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499363.2 10 57-79,287-309,347-369,1038-1057,1064-1083,1093-1115,1143-1165,1175-1197,1210-1232,1252-1274
W09D10.2 10 57-79,287-309,347-369,1038-1057,1064-1083,1093-1115,1143-1165,1175-1197,1210-1232,1252-1274
SNAP00000014514 10 133-155,363-385,423-445,1114-1133,1140-1159,1169-1191,1219-1241,1251-1273,1286-1308,1328-1350
GENEFINDER00000014534 9 141-174,371-393,431-453,1172-1191,1201-1223,1252-1274,1284-1306,1319-1341,1361-1383
Sequence
Target Sequence 
>C. ELEGANS:188190_AT
tatggcagagcctcgttgtcttttttatttgctattttacatatcgtggaagtaacgttg
atatgtggacattcggacatttgctggtgactcaattaataattgtgaatacattccatt
tggctctattcgtacaatattggacatggccaatgttctggtcaatgttcttgtccgttc
ttttattttttatctgtgcacttctttataatggatttgttactgcaaactggacatgga
ctaatgttaaagatccaccatcgatggtttcattgaaatcgttttcgagtttggagtttt
ggatggctctgataatctctgtcgtcctgtgcctaacacctcgatatgtgctcacaacag
tcgttaacacagtcagcccgtcgacaactcttcgaacacgacttggagctgaagatggct
ttaaaaagaagaccgaatcaagatttactgcatgcgctgtcggatgcctttcagctcctt
tcaaatgtgccagaatgtgctgtcaaaagacgaaacccgcagatgttcatgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGCAGAGCCTCGTTGTCTTTTT 373 655 3509 Antisense
GGACATTCGGACATTTGCTGGTGAC 460 525 3575 Antisense
CATTCCATTTGGCTCTATTCGTACA 482 217 3620 Antisense
TCTGGTCAATGTTCTTGTCCGTTCT 50 609 3665 Antisense
GATGGCTCTGATAATCTCTGTCGTC 86 407 3810 Antisense
GTGCCTAACACCTCGATATGTGCTC 165 479 3837 Antisense
CAACAGTCGTTAACACAGTCAGCCC 659 187 3863 Antisense
CCCGTCGACAACTCTTCGAACACGA 393 259 3885 Antisense
AGATTTACTGCATGCGCTGTCGGAT 662 65 3949 Antisense
TTCAGCTCCTTTCAAATGTGCCAGA 534 687 3978 Antisense
GACGAAACCCGCAGATGTTCATGTG 437 379 4017 Antisense
Sequence Source Affymetrix Proprietary Database