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[188187_at]

Description K07C10.1 /REP_DB=WormBase Gene ID /WP=CE01601 /GEN=ptr-13 /TR=Q09934 /GB=CAA87375.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 24      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 22.2
(-1.9)
A 		11.1
(-3)
A 		56.8
(1.3)
A 		74.5
(3)
A 		63
B 59
(-0.8)
A 		65.5
(-0.2)
A 		96.3
(3)
A 		37.9
(-3)
A 		58
C 10.2
(-3)
A 		17.9
(-2.4)
A 		34.6
(-1.2)
A 		93.1
(3)
A 		83
avr 30.5
(-3) 		31.5
(-2.8) 		62.6
(2.1) 		68.5
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 47.9
(3)
A 		31.1
(0.5)
A 		27.4
(-0.1)
A 		8.2
(-3)
A 		11.6
(-2.5)
A 		10.4
(-2.7)
A 		40
B 35.5
(1.2)
A 		47.5
(3)
A 		8.2
(-2.8)
A 		7.3
(-2.9)
A 		6.7
(-3)
A 		15.2
(-1.8)
A 		41
C 72.8
(3)
A 		11.7
(-2.4)
A 		9.6
(-2.6)
A 		8.6
(-2.7)
A 		5.4
(-3)
A 		7.8
(-2.8)
A 		67
avr 52.1
(3) 		30.1
(0) 		15.1
(-2) 		8
(-3) 		7.9
(-3) 		11.1
(-2.6) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 8.1
(-0.3)
A 		2.4
(-3)
A 		14.9
(3)
A 		10.9
(1.1)
A 		13
B 18.8
(1.5)
A 		16.2
(0.4)
A 		22.3
(3)
A 		8.1
(-3)
A 		14
C 3.4
(-3)
A 		5.1
(-2.2)
A 		12.1
(1.2)
A 		15.7
(3)
A 		12
avr 10.1
(-1.4) 		7.9
(-3) 		16.4
(3) 		11.6
(-0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 8.8
(1.5)
A 		11.1
(3)
A 		6
(-0.4)
A 		2.1
(-3)
A 		3.5
(-2.1)
A 		2.5
(-2.7)
A 		9
B 12.4
(1.5)
A 		15.8
(3)
A 		2
(-3)
A 		1.9
(-3)
A 		2.7
(-2.7)
A 		5.7
(-1.4)
A 		14
C 27
(3)
A 		3.6
(-2.5)
A 		2.5
(-2.8)
A 		1.7
(-3)
A 		1.7
(-3)
A 		2.6
(-2.8)
A 		25
avr 16.1
(3) 		10.2
(0.5) 		3.5
(-2.3) 		1.9
(-3) 		2.6
(-2.7) 		3.6
(-2.3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2884
Sequence Type Exemplar sequence
Representative Public ID K07C10.1 NCBI
Target Description K07C10.1 /REP_DB=WormBase Gene ID /WP=CE01601 /GEN=ptr-13 /TR=Q09934 /GB=CAA87375.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063991 NCBI Caenorhabditis elegans PaTched Related family member (ptr-13) (ptr-13) mRNA, complete cds. 11/11 None
SNAP00000026652 ENSEMBL cdna:SNAP chromosome:CEL140:II:11157204:11158234:-1 11/11 None
K07C10.1 ENSEMBL cdna:known chromosome:CEL140:II:11157204:11160474:-1 gene:K07C10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026656 5/11 Cross Hyb Matching Probes None
GENEFINDER00000026657 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11157200-11160471(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ptr-13
Ensembl K07C10.1
Entrez Gene 191748 Entrez gene
SwissProt Q09934 EMBL-EBI
WormBase CE01601 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8158 hedgehog receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87375 Hypothetical protein K07C10.1 [Caenorhabditis elegans] ref|NP_496392.1| PaTched Related family member (ptr-13) [Caenorhabditis elegans] 0.0
blast CAE59556 Hypothetical protein CBG02953 [Caenorhabditis briggsae] 0.0
blast CAA87375 Hypothetical protein K07C10.1 [Caenorhabditis elegans] ref|NP_496392.1| PaTched Related family member (ptr-13) [Caenorhabditis elegans] 1.0E-132
blast CAE59556 Hypothetical protein CBG02953 [Caenorhabditis briggsae] 1.0E-123
blast AAB97556 Patched related family protein 11 [Caenorhabditis elegans] ref|NP_490687.1| PaTched Related family member (ptr-11) [Caenorhabditis elegans] 1.0E-112
blast CAE61284 Hypothetical protein CBG05104 [Caenorhabditis briggsae] 5.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR003392 EMBL-EBI Patched family 8.3E-65
Pfam IPR003392 EMBL-EBI Patched family 2.4E-66
Pfam IPR003392 EMBL-EBI Patched family 2.4E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496392.1 10 105-127,132-154,164-184,205-227,242-264,305-327,513-535,537-556,612-634,641-663
K07C10.1 10 105-127,132-154,164-184,205-227,242-264,305-327,513-535,537-556,612-634,641-663
SNAP00000026652 4 56-78,83-102,158-180,190-212
Sequence
Target Sequence 
>C. ELEGANS:188187_AT
taaaggcgagctcgtcaaatccctggcaattacattcacctgtatgaccattgcttgctt
cgttataatgccttcgtttgtggcgccaaccattgcctctgtagccactgtttctatttc
cttctgcctaatcggtttcctctctatttggggtcaaaacttggatcctgtaacaatgat
tgatgtgataatggcgattggattctctgtcgattatagtgctcatgtctgttatcatta
ttattgtgcaagggagcaacacctaggatccaagcatgaagtgataacaagtgtcctaca
agctgttggaaggcccgttgtagaggcatccctgacaacattactctgcatggccccatt
gttcgtcgtacccgtttatatgatccaatcgtttgcaaaaaccgtaaccctggtaaccag
tttcgggcttctacacggtctctttttcctgccagttgttctttatttcattcctctaaa
tgctcaaaaacactcacttcccagttacacgccaagtactcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAGGCGAGCTCGTCAAATCCCTG 327 639 1530 Antisense
AAATCCCTGGCAATTACATTCACCT 263 117 1546 Antisense
GTATGACCATTGCTTGCTTCGTTAT 598 455 1571 Antisense
ATAATGCCTTCGTTTGTGGCGCCAA 442 25 1594 Antisense
TCTGTAGCCACTGTTTCTATTTCCT 566 605 1627 Antisense
GGAAGGCCCGTTGTAGAGGCATCCC 699 529 1837 Antisense
CATCCCTGACAACATTACTCTGCAT 394 211 1856 Antisense
CATTGTTCGTCGTACCCGTTTATAT 425 215 1886 Antisense
TTTCCTGCCAGTTGTTCTTTATTTC 681 669 1974 Antisense
TCAAAAACACTCACTTCCCAGTTAC 273 627 2013 Antisense
TCCCAGTTACACGCCAAGTACTCAA 610 595 2028 Antisense
Sequence Source Affymetrix Proprietary Database