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[188181_at]

Description C04F12.4 /REP_DB=WormBase Gene ID /WP=CE19677 /GEN=rpl-14 /TR=Q9XVE9 /GB=CAB03835.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 08      6grp_total > 41      4grp_total > 17      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11001
1 2 3 4 range
A 19162.2
(-3)
P 		24812.8
(0.4)
P 		24935.2
(0.4)
P 		29271.4
(3)
P 		10109
B 23350.8
(0.2)
P 		21107.1
(-3)
P 		22654.2
(-0.8)
P 		25309.6
(3)
P 		4203
C 18270.8
(-3)
P 		20534.4
(-1.7)
P 		18779.8
(-2.7)
P 		28827.3
(3)
P 		10557
avr 20261.3
(-3) 		22151.4
(-1.5) 		22123.1
(-1.5) 		27802.8
(3) 		7542

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8156
1 2 3 4 5 6 range
A 22590
(3)
P 		17355.3
(-2.4)
P 		19649.4
(-0)
P 		20902.1
(1.3)
P 		16784.9
(-3)
P 		18596.1
(-1.1)
P 		5805
B 17636.3
(-0.4)
P 		17791.4
(-0.3)
P 		21926.8
(3)
P 		17301.7
(-0.7)
P 		15042.3
(-2.5)
P 		14433.9
(-3)
P 		7493
C 17112.8
(-2.6)
P 		18752.9
(0.3)
P 		20278.3
(3)
P 		19984.6
(2.5)
P 		16883.4
(-3)
P 		17045.4
(-2.7)
P 		3395
avr 19113
(0.9) 		17966.5
(-0.6) 		20618.2
(3) 		19396.1
(1.3) 		16236.9
(-3) 		16691.8
(-2.4) 		4381
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3162
1 2 3 4 range
A 6977
(3)
P 		5386.2
(-0.5)
P 		6518.6
(2)
P 		4284.8
(-3)
P 		2692
B 7446.4
(3)
P 		5213
(-3)
P 		5249.5
(-2.9)
P 		5393.5
(-2.5)
P 		2233
C 6048.1
(1.2)
P 		5903.8
(0.7)
P 		6545.3
(3)
P 		4860.7
(-3)
P 		1685
avr 6823.8
(3) 		5501
(-1) 		6104.5
(0.8) 		4846.3
(-3) 		1978

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2324
1 2 3 4 5 6 range
A 4164.3
(-3)
P 		6172.4
(3)
P 		4279.2
(-2.7)
P 		5301.3
(0.4)
P 		5064.9
(-0.3)
P 		4527.6
(-1.9)
P 		2008
B 6136.6
(3)
P 		5922
(2.2)
P 		5324.5
(-0.1)
P 		4582.6
(-3)
P 		6111.5
(2.9)
P 		5382.3
(0.1)
P 		1554
C 6343
(3)
P 		5722.1
(1.4)
P 		5161.2
(-0.1)
P 		4018.9
(-3)
P 		5463.2
(0.7)
P 		5706.1
(1.4)
P 		2324
avr 5548
(1.2) 		5938.8
(3) 		4921.6
(-1.7) 		4634.3
(-3) 		5546.5
(1.2) 		5205.3
(-0.4) 		1305
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188181_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1924
Sequence Type Exemplar sequence
Representative Public ID C04F12.4 NCBI
Target Description C04F12.4 /REP_DB=WormBase Gene ID /WP=CE19677 /GEN=rpl-14 /TR=Q9XVE9 /GB=CAB03835.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060175 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-14) (rpl-14) mRNA, complete cds. 11/11 None
SNAP00000037402 ENSEMBL cdna:SNAP chromosome:CEL140:I:9697323:9698167:1 11/11 None
GENEFINDER00000037414 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9697323:9698167:1 11/11 None
C04F12.4.1 ENSEMBL cdna:known chromosome:CEL140:I:9697306:9698205:1 gene:C04F12.4 11/11 None
C04F12.4.3 ENSEMBL cdna:known chromosome:CEL140:I:9697316:9698205:1 gene:C04F12.4 11/11 None
C04F12.4.2 ENSEMBL cdna:known chromosome:CEL140:I:9697318:9698219:1 gene:C04F12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9697253-9698098(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rpl-14
Ensembl C04F12.4
Entrez Gene 172818 Entrez gene
SwissProt Q9XVE9 EMBL-EBI
WormBase CE19677 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18225_AT 60S ribosomal protein L14 (RPL14A) at
ATH1-121501:263372_AT 60S ribosomal protein L14 (RPL14A) at
CANINE:1598444_AT similar to ribosomal protein L14 cfa
CANINE_2:CFA.1050.2.S1_S_AT similar to ribosomal protein L14 cfa
DROSOPHILA_2:1623914_AT Ribosomal protein L14 dm
DROSGENOME1:143898_AT Ribosomal protein L14 dm
CHICKEN:GGA.81.1.S1_A_AT ribosomal protein L14 gga
PLASMODIUM_ANOPHELES:200074_S_AT ribosomal protein L14 hs
HG-U133B:200074_S_AT ribosomal protein L14 hs
HG-U133A:200074_S_AT ribosomal protein L14 hs
HG-U133_PLUS_2:200074_S_AT ribosomal protein L14 hs
HG-FOCUS:200074_S_AT ribosomal protein L14 hs
HG-U133A_2:200074_S_AT ribosomal protein L14 hs
U133_X3P:200074_S_AT ribosomal protein L14 hs
HG-U95AV2:31907_AT ribosomal protein L14 hs
HUGENEFL:D87735_AT ribosomal protein L14 hs
HG-U133_PLUS_2:213588_X_AT ribosomal protein L14 hs
HG-U133A_2:213588_X_AT ribosomal protein L14 hs
HG-U133A:213588_X_AT ribosomal protein L14 hs
U133_X3P:G608516_3P_X_AT ribosomal protein L14 hs
U133_X3P:G608516_3P_A_AT ribosomal protein L14 hs
HG-U133A:219138_AT ribosomal protein L14 hs
HG-U133A_2:219138_AT ribosomal protein L14 hs
HG-U133_PLUS_2:219138_AT ribosomal protein L14 hs
HG-U95D:88341_AT Ribosomal protein L14 hs
MOUSE430_2:1422128_AT ribosomal protein L14 mm
MOUSE430A_2:1422128_AT ribosomal protein L14 mm
MOE430A:1422128_AT ribosomal protein L14 mm
MOE430A:1436688_X_AT ribosomal protein L14 mm
MOUSE430A_2:1436688_X_AT ribosomal protein L14 mm
MOUSE430_2:1436688_X_AT ribosomal protein L14 mm
MOUSE430A_2:1438507_X_AT ribosomal protein L14 mm
MOE430A:1438507_X_AT ribosomal protein L14 mm
MOUSE430_2:1438507_X_AT ribosomal protein L14 mm
MOE430A:1438626_X_AT ribosomal protein L14 mm
MOUSE430A_2:1438626_X_AT ribosomal protein L14 mm
MOUSE430_2:1438626_X_AT ribosomal protein L14 mm
MOE430A:1426793_A_AT ribosomal protein L14 mm
MOUSE430A_2:1426793_A_AT ribosomal protein L14 mm
MOUSE430_2:1426793_A_AT ribosomal protein L14 mm
MOE430A:1433688_X_AT ribosomal protein L14 mm
MOUSE430A_2:1433688_X_AT ribosomal protein L14 mm
MOUSE430_2:1433688_X_AT ribosomal protein L14 mm
MG-U74AV2:99653_AT Ribosomal protein L14, mRNA (cDNA clone IMAGE:3588708) mm
MU19KSUBB:TC32110_AT Ribosomal protein L14, mRNA (cDNA clone IMAGE:3588708) mm
MU19KSUBC:TC39493_AT Ribosomal protein L14, mRNA (cDNA clone IMAGE:3588708) mm
MU11KSUBB:W11855_AT Ribosomal protein L14, mRNA (cDNA clone IMAGE:3588708) mm
RG-U34A:X94242_AT ribosomal protein L14 rn
RAE230A:1387887_AT ribosomal protein L14 rn
RAT230_2:1387887_AT ribosomal protein L14 rn
RAE230A:1375375_AT Ribosomal protein L14 rn
RAT230_2:1375375_AT Ribosomal protein L14 rn
YEAST_2:1770109_AT Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similarity to rat L14 ribosomal protein Sc
YEAST_2:1779690_S_AT Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similarity to rat L14 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03835 Hypothetical protein C04F12.4 [Caenorhabditis elegans] ref|NP_492576.1| Ribosomal Protein, Large subunit family member (rpl-14) [Caenorhabditis elegans] 3.0E-61
blast CAE60208 Hypothetical protein CBG03771 [Caenorhabditis briggsae] 1.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR005824 EMBL-EBI KOW 6.2E-6
Pfam IPR002784 EMBL-EBI Ribosomal protein L14 1.0E-42
Sequence
Target Sequence 
>C. ELEGANS:188181_AT
cgtgtcgttcaaattgggcgcgtcgtcttcatcgcctccggcaaagaccaaggcaagctt
gctgccatcgtcaacgttatcgacggaaacagagttcaaatcgatggaccatcctccgat
gtcactcgcaccgtcagaaacttgaaggatcttcagctcaccaagttcgtcctcaagctc
cgtgttggacaacgcaccaagggagttaaggcagctttcgatgccgccaaggtcaccgag
aacttccagaagactcaatgggccaagaagatcgctcaaagagctatcagagccaagctc
accgacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGTCGTTCAAATTGGGCGCGTCG 128 243 25 Antisense
CATCGCCTCCGGCAAAGACCAAGGC 614 211 54 Antisense
GACCAAGGCAAGCTTGCTGCCATCG 681 383 70 Antisense
TGCTGCCATCGTCAACGTTATCGAC 669 579 84 Antisense
AATCGATGGACCATCCTCCGATGTC 374 169 123 Antisense
TCACTCGCACCGTCAGAAACTTGAA 157 627 146 Antisense
TGAAGGATCTTCAGCTCACCAAGTT 322 575 167 Antisense
TCGTCCTCAAGCTCCGTGTTGGACA 634 601 191 Antisense
TTAAGGCAGCTTTCGATGCCGCCAA 667 683 230 Antisense
CGCCAAGGTCACCGAGAACTTCCAG 51 259 249 Antisense
TATCAGAGCCAAGCTCACCGACTTC 63 661 309 Antisense
Sequence Source Affymetrix Proprietary Database