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[188177_at] lipase

Description K04A8.5 /REP_DB=WormBase Gene ID /WP=CE11708 /TR=Q94252 /GB=AAC48051.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster 6grp_high1_10_10 > 97      6grp_total > 87      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 26.6
(-1)
A 		2.2
(-3)
A 		32
(-0.6)
A 		77
(3)
A 		75
B 11
(-3)
A 		44
(0.2)
A 		27
(-1.5)
A 		73.6
(3)
P 		63
C 34.3
(-1.5)
A 		21.8
(-2.8)
A 		19.9
(-3)
A 		76.2
(3)
A 		56
avr 24
(-2.9) 		22.7
(-3) 		26.3
(-2.6) 		75.6
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1060
1 2 3 4 5 6 range
A 132.7
(-2.5)
A 		59
(-3)
P 		180.5
(-2.2)
P 		310.3
(-1.4)
P 		578.5
(0.2)
P 		1026.3
(3)
P 		967
B 92
(-3)
P 		101.3
(-2.9)
P 		157.9
(-2.6)
P 		342.6
(-1.5)
P 		642.3
(0.3)
P 		1094.1
(3)
P 		1002
C 33.9
(-3)
A 		45.3
(-2.9)
P 		102.1
(-2.6)
P 		378
(-1)
P 		540.1
(-0)
P 		1053.4
(3)
P 		1020
avr 86.2
(-2.9) 		68.5
(-3) 		146.8
(-2.5) 		343.6
(-1.3) 		587
(0.1) 		1057.9
(3) 		989
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.7
(2.1)
A 		0.5
(-3)
A 		8.4
(1.4)
A 		11.3
(3)
A 		11
B 3.5
(-3)
A 		10.9
(0.6)
A 		6.3
(-1.6)
A 		15.7
(3)
P 		12
C 11.4
(1.7)
A 		6.3
(-3)
A 		6.9
(-2.4)
A 		12.8
(3)
A 		7
avr 8.2
(-1.1) 		5.9
(-3) 		7.2
(-1.9) 		13.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 24.5
(-2.9)
A 		21
(-3)
P 		39.3
(-2.5)
P 		78.7
(-1.5)
P 		174.6
(1)
P 		249.9
(3)
P 		229
B 32
(-3)
P 		33.7
(-3)
P 		38.3
(-2.9)
P 		90.7
(-2.1)
P 		260.9
(0.7)
P 		408
(3)
P 		376
C 12.6
(-3)
A 		13.8
(-3)
P 		26
(-2.8)
P 		76
(-1.9)
P 		174.8
(-0.1)
P 		352.6
(3)
P 		340
avr 23
(-3) 		22.8
(-3) 		34.5
(-2.8) 		81.8
(-1.9) 		203.4
(0.5) 		336.8
(3) 		314
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188177_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12327
Sequence Type Exemplar sequence
Representative Public ID K04A8.5 NCBI
Target Description K04A8.5 /REP_DB=WormBase Gene ID /WP=CE11708 /TR=Q94252 /GB=AAC48051.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072261 NCBI Caenorhabditis elegans K04A8.5 (lipase) mRNA, complete cds. 11/11 None
SNAP00000001682 ENSEMBL cdna:SNAP chromosome:CEL140:V:6552817:6554392:1 11/11 None
GENEFINDER00000001699 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6552793:6554392:1 11/11 None
K04A8.5 ENSEMBL cdna:known chromosome:CEL140:V:6552793:6554411:1 gene:K04A8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6552792-6554392(+) 100.0 100.0
Public Domain and Genome References
Gene Title lipase
Ensembl K04A8.5
Entrez Gene 179046 Entrez gene
SwissProt Q94252 EMBL-EBI
WormBase CE11708 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16789 carboxylic ester hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48051 Hypothetical protein K04A8.5 [Caenorhabditis elegans] ref|NP_504662.1| K04A8.5 [Caenorhabditis elegans] 0.0
blast CAE71905 Hypothetical protein CBG18966 [Caenorhabditis briggsae] 0.0
blast CAE65482 Hypothetical protein CBG10449 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR006693 EMBL-EBI Ab-hydrolase associated lipase region 1.2E-29
Pfam IPR006693 EMBL-EBI Ab-hydrolase associated lipase region 1.2E-29
Pfam IPR006693 EMBL-EBI Ab-hydrolase associated lipase region 6.0E-25
Sequence
Target Sequence 
>C. ELEGANS:188177_AT
gctcaattaaacatgctcacggcgtgttcttatttctcggtagacactttggcaaagatt
atgaagaatacgtaaagaaacatgggtccgatgaactatttggaagttctttgcttttta
agaaaattgtaaagtacacgtgtggtttatttgacactcttgaagaattttgctctgata
ttacactcctttttattggtacagcaaacgagaattggaatcaaacccggattccagtat
atttggctcacactcctgccggctcatcgagcaatgtgatggctcacttggatcaaatgt
tttcatatggcggagttccaacttttgatatgggagaggagaagaatttgaaggcgtatg
ggcaaaagctacctcctcagtataatttcacaggtattgcggatgttcccatctatctat
tttggagtgatgatgattggctttcaacaaaacaagacctggaagaaacgttgttcgcgc
agttgaattctcaagtcgttcagggaagcttccgaattgaaaactacaaccacttacatt
tcatttggggaacaaatgcagccagccaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAATTAAACATGCTCACGGCGT 506 301 632 Antisense
GCGTGTTCTTATTTCTCGGTAGACA 629 291 653 Antisense
TTTGCTCTGATATTACACTCCTTTT 324 669 800 Antisense
ACACTCCTTTTTATTGGTACAGCAA 172 109 814 Antisense
TCCAGTATATTTGGCTCACACTCCT 465 589 864 Antisense
GGCGTATGGGCAAAAGCTACCTCCT 216 539 984 Antisense
GCTACCTCCTCAGTATAATTTCACA 357 303 999 Antisense
GTATTGCGGATGTTCCCATCTATCT 623 451 1025 Antisense
GTTGTTCGCGCAGTTGAATTCTCAA 5 439 1101 Antisense
AACTACAACCACTTACATTTCATTT 463 139 1153 Antisense
GGGGAACAAATGCAGCCAGCCAAGT 346 499 1178 Antisense
Sequence Source Affymetrix Proprietary Database