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[188173_s_at]

Description C28C12.9 /REP_DB=WormBase Gene ID /WP=CE04116 /GEN=gei-9 /TR=Q18281 /GB=AAB37552.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 24      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 178.9
(-3)
P 		276
(-0.6)
P 		293.1
(-0.2)
P 		421.1
(3)
P 		242
B 168.2
(-3)
P 		258.2
(-0.4)
P 		248.5
(-0.7)
P 		378.9
(3)
P 		211
C 202.3
(-3)
P 		268.9
(-0.6)
P 		368.2
(3)
P 		361
(2.7)
P 		166
avr 183.1
(-3) 		267.7
(-0.5) 		303.3
(0.5) 		387
(3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 781
1 2 3 4 5 6 range
A 227.5
(-3)
P 		247.7
(-2.8)
P 		255
(-2.7)
P 		423.5
(-1)
P 		544.9
(0.3)
P 		810.9
(3)
P 		583
B 225.5
(-3)
P 		259.8
(-2.6)
P 		294.1
(-2.1)
P 		406.3
(-0.8)
P 		680.8
(2.6)
P 		709.5
(3)
P 		484
C 216.1
(-3)
P 		281.4
(-2.5)
P 		345.8
(-2)
P 		436.4
(-1.3)
P 		603.9
(-0)
P 		996.7
(3)
P 		781
avr 223
(-3) 		263
(-2.6) 		298.3
(-2.3) 		422.1
(-1.1) 		609.9
(0.8) 		839
(3) 		616
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 65.1
(-1.1)
P 		59.9
(-3)
P 		76.6
(3)
P 		61.6
(-2.4)
P 		17
B 53.6
(-3)
P 		63.8
(-0.8)
P 		57.6
(-2.1)
P 		80.8
(3)
P 		27
C 67
(-2.5)
P 		77.3
(-1.5)
P 		128.3
(3)
P 		60.9
(-3)
P 		67
avr 61.9
(-3) 		67
(-1.8) 		87.5
(3) 		67.8
(-1.6) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 41.9
(-3)
P 		88.1
(-1.2)
P 		55.5
(-2.5)
P 		107.4
(-0.5)
P 		164.4
(1.7)
P 		197.4
(3)
P 		156
B 78.5
(-2.8)
P 		86.5
(-2.6)
P 		71.4
(-3)
P 		107.6
(-1.9)
P 		276.6
(3)
P 		264.6
(2.6)
P 		205
C 80.1
(-3)
P 		85.9
(-2.9)
P 		88
(-2.8)
P 		87.8
(-2.8)
P 		195.4
(-0.3)
P 		333.7
(3)
P 		254
avr 66.8
(-3) 		86.8
(-2.4) 		71.6
(-2.9) 		100.9
(-2) 		212.1
(1.4) 		265.2
(3) 		198
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188173_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9423
Sequence Type Exemplar sequence
Representative Public ID C28C12.9 NCBI
Target Description C28C12.9 /REP_DB=WormBase Gene ID /WP=CE04116 /GEN=gei-9 /TR=Q18281 /GB=AAB37552.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069050 NCBI Caenorhabditis elegans C28C12.12 (C28C12.12) mRNA, complete cds. 11/11 None
SNAP00000012169 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8494780:8498805:-1 11/11 None
GENEFINDER00000012174 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8494780:8498805:-1 11/11 None
C28C12.12.1 ENSEMBL cdna:known chromosome:CEL140:IV:8494544:8496345:-1 gene:C28C12.12 11/11 None
C28C12.12.2 ENSEMBL cdna:known chromosome:CEL140:IV:8494598:8496347:-1 gene:C28C12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8494785-8498811(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C28C12.12
Entrez Gene 177653 Entrez gene
SwissProt Q95QT5 EMBL-EBI
WormBase CE28891 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95870 Hypothetical protein C28C12.12 [Caenorhabditis elegans] ref|NP_501451.1| C28C12.12 [Caenorhabditis elegans] 0.0
blast T15680 hypothetical protein C28C12.9 - Caenorhabditis elegans 0.0
blast AAK95871 Gex interacting protein protein 9, isoform a [Caenorhabditis elegans] ref|NP_501452.1| GEX Interacting protein family member (gei-9) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 6.0E-75
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 5.0E-75
Sequence
Target Sequence 
>C. ELEGANS:188173_S_AT
ggtttgctgaaacacactgcgaaagttttctatgtggatgtagaaaaaaagtctaaagaa
gatccgtctccaccacttgtcacatgttccacttttgcccagcttcttgagataatggca
gaacttgttcaagaagatccacaaaatgatgaatacgatcacagaaaacatattgctaat
attgattcggaagaattcgagaaaaagatcaaattcatgggaatccgtggaaatttcttc
aaagaggacaagtctattgctgactacacgaagaaaaaagttcgaaagatttttttggat
aatgcagtgaagaaagtttttcgaaaaaaccgttatgggttcaaattcaatacgaaagat
tgcttgctcgcactggagaattactacaccctgaacaaacccaaagttgataatggttcc
aatgctaagcaattgtcagttcgtattcgtcctcttatcaaatcatgtttcaacgtggct
cgcagaacggatccgaactttattgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTGCTGAAACACACTGCGAAAG 456 505 2377 Antisense
ACTTTTGCCCAGCTTCTTGAGATAA 307 103 2467 Antisense
GGACAAGTCTATTGCTGACTACACG 670 525 2622 Antisense
AAGATTGCTTGCTCGCACTGGAGAA 141 155 2732 Antisense
GCACTGGAGAATTACTACACCCTGA 282 315 2746 Antisense
TACACCCTGAACAAACCCAAAGTTG 80 641 2761 Antisense
GCAATTGTCAGTTCGTATTCGTCCT 510 323 2805 Antisense
GTATTCGTCCTCTTATCAAATCATG 211 453 2819 Antisense
AAATCATGTTTCAACGTGGCTCGCA 476 117 2836 Antisense
TCAACGTGGCTCGCAGAACGGATCC 488 631 2846 Antisense
GAACGGATCCGAACTTTATTGTCAC 188 349 2861 Antisense
Sequence Source Affymetrix Proprietary Database