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[188172_at] lipase

Description F46G10.4 /REP_DB=WormBase Gene ID /WP=CE02240 /TR=Q20478 /GB=CAA90544.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=lipase
Cluster 4grp_high_8_8 > 30      6grp_total > 0      4grp_total > 24      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 94.5
(-3)
P 		134
(-0.7)
P 		175.1
(1.7)
P 		196.4
(3)
A 		102
B 112.4
(-3)
P 		145.5
(0.4)
P 		138.7
(-0.3)
A 		170.3
(3)
P 		58
C 123.1
(-2.7)
P 		142
(-0.6)
P 		120.4
(-3)
P 		174.1
(3)
A 		54
avr 110
(-3) 		140.5
(-0.4) 		144.7
(-0) 		180.3
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 82.9
(1.7)
A 		95.8
(3)
P 		70.3
(0.5)
A 		34.8
(-3)
A 		82.6
(1.7)
A 		75.9
(1)
A 		61
B 53
(-3)
A 		111.4
(3)
P 		93.1
(1.1)
A 		61.3
(-2.1)
A 		104.5
(2.3)
A 		87.6
(0.6)
A 		58
C 73.5
(-1.8)
A 		97.3
(0.9)
A 		116.6
(3)
A 		69.2
(-2.3)
A 		62.7
(-3)
A 		109.8
(2.2)
A 		54
avr 69.8
(-1.1) 		101.5
(3) 		93.3
(1.9) 		55.1
(-3) 		83.3
(0.6) 		91.1
(1.7) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 34.4
(-1)
P 		29.1
(-2.9)
P 		45.8
(3)
P 		28.7
(-3)
A 		17
B 35.8
(2.3)
P 		35.9
(2.4)
P 		32.1
(-3)
A 		36.3
(3)
P 		4
C 40.8
(2.4)
P 		40.8
(2.4)
P 		42
(3)
P 		29.4
(-3)
A 		13
avr 37
(0.9) 		35.3
(-0.3) 		40
(3) 		31.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 15.3
(-1.5)
A 		34.1
(3)
P 		15.3
(-1.5)
A 		8.8
(-3)
A 		24.9
(0.8)
A 		18.5
(-0.7)
A 		25
B 18.4
(-2.5)
A 		37.1
(1.8)
P 		22.6
(-1.5)
A 		16.2
(-3)
A 		42.5
(3)
A 		32.7
(0.8)
A 		26
C 27.2
(0.5)
A 		29.7
(1.1)
A 		29.7
(1.1)
A 		13.9
(-3)
A 		20.3
(-1.3)
A 		36.8
(3)
A 		23
avr 20.3
(-0.9) 		33.6
(3) 		22.5
(-0.2) 		13
(-3) 		29.2
(1.7) 		29.3
(1.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17645
Sequence Type Exemplar sequence
Representative Public ID F46G10.4 NCBI
Target Description F46G10.4 /REP_DB=WormBase Gene ID /WP=CE02240 /TR=Q20478 /GB=CAA90544.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077820(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077820 NCBI Caenorhabditis elegans F46G10.4 (lipase) mRNA, complete cds. 11/11 None
SNAP00000042666 ENSEMBL cdna:SNAP chromosome:CEL140:X:13334031:13336204:1 9/11 None
GENEFINDER00000042674 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13334031:13336536:1 11/11 None
F46G10.4 ENSEMBL cdna:known chromosome:CEL140:X:13333997:13336704:1 gene:F46G10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13334030-13336204(+) 100.0 100.0
Public Domain and Genome References
Gene Title lipase
Ensembl F46G10.4
Entrez Gene 185877 Entrez gene
SwissProt Q20478 EMBL-EBI
WormBase CE02240 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250008_AT lipase class 3 family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90544 Hypothetical protein F46G10.4 [Caenorhabditis elegans] ref|NP_510221.1| F46G10.4 [Caenorhabditis elegans] 0.0
blast CAA90544 Hypothetical protein F46G10.4 [Caenorhabditis elegans] ref|NP_510221.1| F46G10.4 [Caenorhabditis elegans] 1.0E-179
blast CAE63368 Hypothetical protein CBG07778 [Caenorhabditis briggsae] 1.0E-161
blast CAE63368 Hypothetical protein CBG07778 [Caenorhabditis briggsae] 1.0E-145
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 3.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 1.1E-54
Pfam IPR002921 EMBL-EBI Lipase, class 3 4.3E-28
Pfam IPR002921 EMBL-EBI Lipase, class 3 1.9E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510221.1 1 7-29
F46G10.4 1 7-29
SNAP00000042666 1 7-29
GENEFINDER00000042674 2 7-29,319-338
Sequence
Target Sequence 
>C. ELEGANS:188172_AT
ctaacagcttttcgaattgcctttcgacagttttcaagcagaataaaagtgcacactttc
ggcgaacctcgcgttggagataccgtttttgcgagttattttacggatatggttccatat
gcctttcgagttgttcataatactgacccgattcctcatcttccaccattaaatgtggca
aatgaagccgggccgggaatgccgtatcatcatccgagagaaatatggtacaacgacgat
ttttcaaattatgtcatgtgcagcgatgtgaatggggaggactggagttgcagtgacaaa
aaacgattttggaattatggtagtaagggagcctaccgtcatacccattacttcaatcac
tttgtttccgagtacggcgctcttggatgcaattccacgccacacaaacaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAACAGCTTTTCGAATTGCCTTTC 217 225 556 Antisense
ATTGCCTTTCGACAGTTTTCAAGCA 686 5 571 Antisense
AAAAGTGCACACTTTCGGCGAACCT 228 131 600 Antisense
GAACCTCGCGTTGGAGATACCGTTT 87 331 619 Antisense
TCATAATACTGACCCGATTCCTCAT 226 619 690 Antisense
ATTCCTCATCTTCCACCATTAAATG 700 7 706 Antisense
GAATGCCGTATCATCATCCGAGAGA 388 331 752 Antisense
TAGTAAGGGAGCCTACCGTCATACC 448 651 876 Antisense
GTCATACCCATTACTTCAATCACTT 370 467 893 Antisense
TACGGCGCTCTTGGATGCAATTCCA 677 647 928 Antisense
CAATTCCACGCCACACAAACAAACG 317 175 945 Antisense
Sequence Source Affymetrix Proprietary Database