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[188169_at]

Description Y17G7A.1 /REP_DB=WormBase Gene ID /WP=CE21378 /GEN=hmg-12 /TR=O45912 /GB=CAA15962.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 40      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 641
1 2 3 4 range
A 383.4
(-3)
A 		731.4
(3)
P 		685.7
(2.2)
P 		653.3
(1.7)
P 		348
B 386.2
(-3)
A 		594.6
(-1)
M 		1013.9
(3)
P 		641.1
(-0.6)
P 		628
C 372.6
(-3)
A 		623.9
(-0.5)
M 		977.4
(3)
P 		664.3
(-0.1)
P 		605
avr 380.7
(-3) 		650
(0.2) 		892.3
(3) 		652.9
(0.2) 		512

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1562
1 2 3 4 5 6 range
A 432.4
(-3)
A 		487
(-2.7)
M 		606.5
(-2.1)
M 		560.2
(-2.4)
P 		1632.4
(3)
P 		1592.5
(2.8)
P 		1200
B 327.6
(-3)
A 		404
(-2.7)
A 		901.8
(-0.8)
P 		814.5
(-1.1)
P 		1505.3
(1.5)
P 		1887.1
(3)
P 		1560
C 417.8
(-2.7)
A 		350.3
(-3)
A 		510.1
(-2.4)
P 		532.6
(-2.3)
P 		1771.2
(2.5)
P 		1889.1
(3)
P 		1539
avr 392.6
(-3) 		413.8
(-2.9) 		672.8
(-1.8) 		635.8
(-2) 		1636.3
(2.3) 		1789.6
(3) 		1397
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 139.6
(0.2)
A 		158.8
(1.5)
P 		179.3
(3)
P 		95.6
(-3)
P 		84
B 123.2
(-3)
A 		146.9
(-1.7)
M 		234.9
(3)
P 		136.6
(-2.3)
P 		112
C 123.3
(-2.7)
A 		179.4
(-1.2)
M 		340.6
(3)
P 		112
(-3)
P 		229
avr 128.7
(-2.4) 		161.7
(-0.9) 		251.6
(3) 		114.7
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 624
1 2 3 4 5 6 range
A 79.7
(-3)
A 		173.2
(-1.6)
M 		132.1
(-2.2)
M 		142.1
(-2.1)
P 		492.6
(3)
P 		387.7
(1.5)
P 		413
B 114
(-3)
A 		134.5
(-2.8)
A 		219
(-1.9)
P 		215.7
(-2)
P 		611.6
(2.1)
P 		703.7
(3)
P 		590
C 154.9
(-2.5)
A 		106.9
(-3)
A 		129.8
(-2.7)
P 		107.1
(-3)
P 		573.1
(2.3)
P 		632.4
(3)
P 		526
avr 116.2
(-3) 		138.2
(-2.7) 		160.3
(-2.4) 		155
(-2.5) 		559.1
(2.8) 		574.6
(3) 		458
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188169_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3252
Sequence Type Exemplar sequence
Representative Public ID Y17G7A.1 NCBI
Target Description Y17G7A.1 /REP_DB=WormBase Gene ID /WP=CE21378 /GEN=hmg-12 /TR=O45912 /GB=CAA15962.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064143(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064143 NCBI Caenorhabditis elegans HMG family member (hmg-12) (hmg-12) mRNA, complete cds. 11/11 None
SNAP00000003380 ENSEMBL cdna:SNAP chromosome:CEL140:II:11916418:11917415:1 11/11 None
GENEFINDER00000003384 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11916418:11917415:1 11/11 None
Y17G7A.1.2 ENSEMBL cdna:known chromosome:CEL140:II:11916415:11917496:1 gene:Y17G7A.1 11/11 None
Y17G7A.1.1 ENSEMBL cdna:known chromosome:CEL140:II:11916417:11917547:1 gene:Y17G7A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11916414-11917412(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol hmg-12
Ensembl Y17G7A.1
Entrez Gene 174829 Entrez gene
SwissProt O45912 EMBL-EBI
WormBase CE21378 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15962 Hypothetical protein Y17G7A.1 [Caenorhabditis elegans] ref|NP_496544.1| HMG family member (hmg-12) [Caenorhabditis elegans] gb|AAC78601.1| high mobility group protein I beta [Caenorhabditis elegans] 1.0E-146
Sequence
Target Sequence 
>C. ELEGANS:188169_AT
tgacgcggatgtcaacgacaccggctcatcaccagtcaagaagggacgtggtcgcccaat
aaagaatccttcagctgatgctggttccccattggtcaagaaaggacgtggacgcagagc
gcaaactccggcagctgacacggacgccatcgacaccgcctcatcaccagtcaagaaggg
acgtggtcgcccagcaaagaatccttcagctgatgctggttccccattggtcaagaaagg
acgtggtcgccaagcgaaaaatctggccgctgacacggatgccatcgacaccgcctcatc
accagtcaagaagggacgcggtcgcccactgaagaaaactgccgctgaagccgacgtcaa
cggattgggctcaccatctgccaaccgaataactggctgccctccatcgacaaaggtttc
gaatcaatcttcaccaccggaacctgctgtcaacgagtctgaagaggccgatgagccagt
cctgaagcgaggacgttcagtgaagcagcccaaagacgaatccgagtctgacgacgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGCGGATGTCAACGACACCGGC 553 569 333 Antisense
CCGGCTCATCACCAGTCAAGAAGGG 19 267 353 Antisense
GACGTGGACGCAGAGCGCAAACTCC 150 377 437 Antisense
CAAACTCCGGCAGCTGACACGGACG 462 181 454 Antisense
AAAATCTGGCCGCTGACACGGATGC 485 133 590 Antisense
GTCGCCCACTGAAGAAAACTGCCGC 145 475 653 Antisense
GCCGACGTCAACGGATTGGGCTCAC 400 283 682 Antisense
TCACCATCTGCCAACCGAATAACTG 492 625 703 Antisense
CTGCCCTCCATCGACAAAGGTTTCG 399 235 729 Antisense
AGGTTTCGAATCAATCTTCACCACC 243 57 746 Antisense
GACGAATCCGAGTCTGACGACGAGG 477 377 847 Antisense
Sequence Source Affymetrix Proprietary Database