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[188168_at] Lipase

Description R07G3.2 /REP_DB=WormBase Gene ID /WP=CE02021 /TR=Q09611 /GB=AAK31544.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Lipase
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 64      6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 754
1 2 3 4 range
A 79.3
(-3)
P 		586.9
(1.9)
P 		700.2
(3)
P 		132.7
(-2.5)
P 		621
B 145.3
(-2.6)
P 		826.8
(3)
P 		756.3
(2.4)
P 		96.7
(-3)
P 		730
C 112.3
(-3)
P 		833.5
(3)
P 		827.4
(2.9)
P 		128.2
(-2.9)
P 		721
avr 112.3
(-3) 		749.1
(2.9) 		761.3
(3) 		119.2
(-2.9) 		649

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 911
1 2 3 4 5 6 range
A 230.3
(-3)
P 		1082.3
(3)
P 		926.7
(1.9)
P 		859.4
(1.4)
P 		1042
(2.7)
P 		802.2
(1)
P 		852
B 309.2
(-3)
P 		969.8
(1.8)
P 		1028.8
(2.2)
P 		728.1
(0)
P 		1141.6
(3)
P 		775.8
(0.4)
P 		832
C 353.2
(-3)
P 		1011
(2.6)
P 		1012.6
(2.6)
P 		1056.2
(3)
P 		1015.4
(2.7)
P 		825.5
(1)
P 		703
avr 297.6
(-3) 		1021
(2.6) 		989.4
(2.4) 		881.2
(1.6) 		1066.3
(3) 		801.2
(0.9) 		769
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 28.9
(-2.7)
P 		127.4
(1)
P 		183
(3)
P 		19.4
(-3)
P 		164
B 46.3
(-2.2)
P 		204.2
(3)
P 		175.3
(2.1)
P 		20.6
(-3)
P 		184
C 37.2
(-2.6)
P 		239.6
(1.9)
P 		288.4
(3)
P 		21.6
(-3)
P 		267
avr 37.5
(-2.5) 		190.4
(2.2) 		215.6
(3) 		20.5
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 42.5
(-3)
P 		384.9
(3)
P 		201.8
(-0.2)
P 		218
(0.1)
P 		314.4
(1.8)
P 		195.3
(-0.3)
P 		342
B 107.6
(-3)
P 		322.8
(0.6)
P 		249.8
(-0.6)
P 		192.8
(-1.6)
P 		463.8
(3)
P 		289.3
(0.1)
P 		356
C 130.9
(-3)
P 		308.5
(2.4)
P 		257.7
(0.8)
P 		212.4
(-0.5)
P 		328.6
(3)
P 		276.4
(1.4)
P 		198
avr 93.7
(-3) 		338.7
(2.3) 		236.4
(0.1) 		207.7
(-0.5) 		368.9
(3) 		253.7
(0.5) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4961
Sequence Type Exemplar sequence
Representative Public ID R07G3.2 NCBI
Target Description R07G3.2 /REP_DB=WormBase Gene ID /WP=CE02021 /TR=Q09611 /GB=AAK31544.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063195(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063195 NCBI Caenorhabditis elegans R07G3.2 (Lipase) mRNA, complete cds. 11/11 None
SNAP00000041806 ENSEMBL cdna:SNAP chromosome:CEL140:II:7608204:7610711:1 11/11 None
GENEFINDER00000041816 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7608292:7610711:1 10/11 None
R07G3.2 ENSEMBL cdna:known chromosome:CEL140:II:7608204:7610711:1 gene:R07G3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7608200-7610708(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lipase
Ensembl R07G3.2
Entrez Gene 187683 Entrez gene
SwissProt Q09611 EMBL-EBI
WormBase CE36003 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31544 Hypothetical protein R07G3.2 [Caenorhabditis elegans] ref|NP_495596.3| R07G3.2 [Caenorhabditis elegans] 1.0E-152
blast AAK31544 Hypothetical protein R07G3.2 [Caenorhabditis elegans] ref|NP_495596.3| R07G3.2 [Caenorhabditis elegans] 1.0E-131
blast AAK31544 Hypothetical protein R07G3.2 [Caenorhabditis elegans] ref|NP_495596.3| R07G3.2 [Caenorhabditis elegans] 1.0E-120
blast T16705 hypothetical protein R07G3.2 - Caenorhabditis elegans 1.0E-113
blast CAE67499 Hypothetical protein CBG13009 [Caenorhabditis briggsae] 1.0E-108
blast CAE67499 Hypothetical protein CBG13009 [Caenorhabditis briggsae] 9.0E-87
blast T16705 hypothetical protein R07G3.2 - Caenorhabditis elegans 9.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 3.9E-59
Pfam IPR002918 EMBL-EBI Lipase, class 2 2.6E-77
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.9E-81
Sequence
Target Sequence 
>C. ELEGANS:188168_AT
tcagatttctcacctagtttcaataagtttttaattgataactatggtaaaggaatcaat
gatttattggcaagaagagatattggaccacatggaagttatggtggtggtacacatgat
ggaagtaaaagaaccagtaaacaagctgttattctcgtgcatggaatcacaaatactgca
ggtactttccaagggcatagacatcatcttctgaatgcgggatggagtgaagaattggca
attctcggaggagcttgtgtggaaacaggagagaatctcggaccaccattgactgcatta
attgacacatatgtatctgttgctggagccaatcgtggatcattcctttgtgctcttcca
tttcctggagcatgtaacatgaataatggactatcatgtatgtctgcatatattaaggat
atcaattctcgtccaagatatgaaggaaaatacattttttcaatttacggaccaggagac
gataaagttggataccgtaatacttgtggacagttatgctcacagattgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGATTTCTCACCTAGTTTCAATA 447 621 58 Antisense
ACAAGCTGTTATTCTCGTGCATGGA 455 113 198 Antisense
AATACTGCAGGTACTTTCCAAGGGC 21 171 229 Antisense
GGGCATAGACATCATCTTCTGAATG 293 493 250 Antisense
AGGAGAGAATCTCGGACCACCATTG 681 55 324 Antisense
GGACCACCATTGACTGCATTAATTG 234 523 337 Antisense
ATCGTGGATCATTCCTTTGTGCTCT 541 35 389 Antisense
TGTGCTCTTCCATTTCCTGGAGCAT 367 557 406 Antisense
ATGGACTATCATGTATGTCTGCATA 177 53 443 Antisense
AAGGATATCAATTCTCGTCCAAGAT 615 159 472 Antisense
TGGACAGTTATGCTCACAGATTGCT 175 547 564 Antisense
Sequence Source Affymetrix Proprietary Database