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[188167_s_at]

Description T22B7.1 /REP_DB=WormBase Gene ID /WP=CE28487 /GEN=egl-13 /TR=Q23045 /GB=AAB04597.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 54      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 49.4
(3)
A 		16.1
(-1.3)
A 		6
(-2.6)
A 		2.9
(-3)
A 		47
B 33.8
(1.5)
A 		23.1
(-2.5)
A 		21.8
(-3)
A 		37.7
(3)
A 		16
C 42.4
(2.9)
A 		42.3
(2.8)
A 		43.3
(3)
A 		5.3
(-3)
A 		38
avr 41.9
(3) 		27.2
(-0.3) 		23.7
(-1.1) 		15.3
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 19.9
(-0.9)
A 		49.8
(2.8)
A 		29.6
(0.3)
A 		51.6
(3)
A 		33.5
(0.8)
A 		2.3
(-3)
A 		49
B 32.2
(1.6)
A 		38.2
(3)
A 		27.2
(0.4)
A 		34.7
(2.2)
A 		26
(0.2)
A 		12.4
(-3)
A 		26
C 70.8
(3)
P 		63
(2.3)
A 		19.2
(-1.5)
A 		5.3
(-2.8)
A 		47.8
(1)
A 		2.7
(-3)
A 		68
avr 41
(1.7) 		50.3
(3) 		25.3
(-0.4) 		30.5
(0.3) 		35.8
(1) 		5.8
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18
(3)
A 		3.5
(-1.9)
A 		1.6
(-2.6)
A 		0.4
(-3)
A 		18
B 10.8
(3)
A 		5.7
(-2.4)
A 		5.1
(-3)
A 		8
(0.1)
A 		6
C 14
(2.5)
A 		12.2
(1.8)
A 		15.1
(3)
A 		0.9
(-3)
A 		14
avr 14.3
(3) 		7.1
(-0.9) 		7.3
(-0.8) 		3.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3.7
(-1.9)
A 		17.7
(3)
A 		6.4
(-1)
A 		13.1
(1.4)
A 		10.1
(0.3)
A 		0.6
(-3)
A 		17
B 11.2
(1.9)
A 		12.7
(3)
A 		6.6
(-1.5)
A 		9.2
(0.4)
A 		10.5
(1.4)
A 		4.6
(-3)
A 		8
C 26.3
(3)
P 		19.2
(1.3)
A 		4.9
(-2.1)
A 		1.1
(-3)
A 		15.5
(0.4)
A 		0.9
(-3)
A 		25
avr 13.7
(1.8) 		16.5
(3) 		6
(-1.3) 		7.8
(-0.6) 		12
(1.1) 		2
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188167_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16027
Sequence Type Exemplar sequence
Representative Public ID T22B7.1 NCBI
Target Description T22B7.1 /REP_DB=WormBase Gene ID /WP=CE28487 /GEN=egl-13 /TR=Q23045 /GB=AAB04597.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029747(11), NM_001029748(11), NM_001029749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029747 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
NM_001029748 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
NM_001029749 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
T22B7.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:5663795:5673344:1 gene:T22B7.1 11/11 None
T22B7.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:5668278:5674018:1 gene:T22B7.1 11/11 None
T22B7.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:5669645:5673344:1 gene:T22B7.1 11/11 None
T22B7.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:5671331:5673344:1 gene:T22B7.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180833 4 3 NM_001029747 175723_at (11), 188167_s_at (11)
NM_001029748 175723_at (11), 188167_s_at (11)
NM_001029749 175723_at (11), 188167_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5671017-5671752(+) 100.0 100.0
Public Domain and Genome References
Ensembl T22B7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04597 Egg laying defective protein 13, isoform a [Caenorhabditis elegans] ref|NP_001024918.1| EGg Laying defective family member (egl-13) [Caenorhabditis elegans] gb|AAD12252.1| Sox domain protein COG-2 [Caenorhabditis elegans] 0.0
blast AAX88814 Egg laying defective protein 13, isoform c [Caenorhabditis elegans] ref|NP_001024920.1| EGg Laying defective family member (egl-13) [Caenorhabditis elegans] 0.0
blast CAE68778 Hypothetical protein CBG14721 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Sequence
Target Sequence 
>C. ELEGANS:188167_S_AT
gcacgtcagcaacaaccggaatttctgattttcccgatattctggcacaaactgaacacg
gctgttctgtactaatagacggaaatcacttaagagagattatcaattcagtggatacgc
aagacggaaaacaagatctattatcagacgttatccgacagctgacatcaataaaagaga
ggttaacaaacgacgagagtcctgtcaaagacgatttaaaagaagatcctgacgacatga
gcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGTCAGCAACAACCGGAATTTC 15 313 59 Antisense
AATTTCTGATTTTCCCGATATTCTG 377 175 78 Antisense
GATTTTCCCGATATTCTGGCACAAA 527 429 85 Antisense
CTGGCACAAACTGAACACGGCTGTT 436 241 100 Antisense
ACGGCTGTTCTGTACTAATAGACGG 617 95 116 Antisense
TCAATTCAGTGGATACGCAAGACGG 170 629 161 Antisense
GATCTATTATCAGACGTTATCCGAC 540 419 193 Antisense
ACGTTATCCGACAGCTGACATCAAT 97 95 206 Antisense
AACAAACGACGAGAGTCCTGTCAAA 325 131 243 Antisense
GAGAGTCCTGTCAAAGACGATTTAA 457 395 253 Antisense
AGAAGATCCTGACGACATGAGCCCG 156 75 279 Antisense
Sequence Source Affymetrix Proprietary Database