[Home] | [Total List]

[188166_s_at]

Description T27C4.4A /REP_DB=WormBase Gene ID /WP=CE21211 /GEN=egr-1 /TR=O61907 /GB=AAD34653.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 37      6grp_cgc > 70      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 73.2
(0.8)
P 		88.3
(2.2)
A 		32.4
(-3)
A 		97.3
(3)
A 		65
B 94.7
(3)
P 		5.4
(-3)
A 		60.6
(0.7)
A 		28.1
(-1.5)
A 		89
C 41.3
(0.3)
P 		61.5
(3)
A 		19
(-2.7)
A 		16.5
(-3)
A 		45
avr 69.7
(3) 		51.7
(-0.3) 		37.3
(-3) 		47.3
(-1.1) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 102.3
(3)
P 		50.2
(-0.3)
A 		60.8
(0.3)
P 		59.2
(0.2)
A 		28.1
(-1.8)
A 		8.9
(-3)
A 		93
B 87
(3)
P 		26.8
(-1.9)
A 		87.3
(3)
P 		53.4
(0.2)
A 		36.3
(-1.1)
A 		13.4
(-3)
A 		74
C 56
(0.6)
P 		89.8
(3)
A 		82.8
(2.5)
P 		39
(-0.7)
A 		27
(-1.5)
A 		6.7
(-3)
A 		83
avr 81.8
(3) 		55.6
(0.8) 		77
(2.6) 		50.5
(0.4) 		30.5
(-1.3) 		9.7
(-3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 26.7
(3)
P 		19.2
(0.5)
A 		8.5
(-3)
A 		14.2
(-1.1)
A 		18
B 30.2
(3)
P 		1.3
(-3)
A 		14.1
(-0.3)
A 		6
(-2)
A 		29
C 13.7
(1.4)
P 		17.7
(3)
A 		6.6
(-1.5)
A 		2.8
(-3)
A 		15
avr 23.5
(3) 		12.7
(-1.1) 		9.7
(-2.2) 		7.7
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 18.9
(3)
P 		17.8
(2.6)
A 		13.2
(1)
P 		15
(1.6)
A 		8.5
(-0.7)
A 		2.2
(-3)
A 		17
B 30.3
(3)
P 		8.9
(-2.1)
A 		21.2
(0.8)
P 		14.1
(-0.8)
A 		14.8
(-0.7)
A 		5
(-3)
A 		25
C 20.8
(1.4)
P 		27.4
(3)
A 		21.1
(1.5)
P 		7.8
(-1.7)
A 		8.7
(-1.5)
A 		2.2
(-3)
A 		25
avr 23.3
(3) 		18
(1.4) 		18.5
(1.6) 		12.3
(-0.3) 		10.7
(-0.7) 		3.1
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188166_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15557
Sequence Type Exemplar sequence
Representative Public ID T27C4.4A NCBI
Target Description T27C4.4A /REP_DB=WormBase Gene ID /WP=CE21211 /GEN=egr-1 /TR=O61907 /GB=AAD34653.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071630 NCBI Caenorhabditis elegans EGl-27 Related family member (egr-1) (egr-1) mRNA, complete cds. 11/11 A 
SNAP00000000360 ENSEMBL cdna:SNAP chromosome:CEL140:V:3704827:3712318:1 11/11 None
GENEFINDER00000000368 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3704827:3712318:1 11/11 None
T27C4.4a ENSEMBL cdna:known chromosome:CEL140:V:3704827:3712332:1 gene:T27C4.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178788 4 1 NM_071630 188149_s_at (11), 188166_s_at (11)
NM_071631 188149_s_at (11)
NM_182324 188149_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3704826-3712318(+) 93.32 100.0
Public Domain and Genome References
Ensembl T27C4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD34653 Egl-27 related protein 1, isoform a [Caenorhabditis elegans] ref|NP_504031.1| EGl-27 Related family member (egr-1) [Caenorhabditis elegans] 0.0
blast AAO25984 Egl-27 related protein 1, isoform d [Caenorhabditis elegans] ref|NP_872124.1| EGl-27 Related family member (egr-1) [Caenorhabditis elegans] 0.0
blast AAD34654 Egl-27 related protein 1, isoform b [Caenorhabditis elegans] ref|NP_504032.1| EGl-27 Related family member (egr-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 5.2E-6
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 1.7E-9
Pfam IPR000949 EMBL-EBI ELM2 domain 3.8E-26
Pfam IPR001025 EMBL-EBI Bromo adjacent region 2.8E-22
Sequence
Target Sequence 
>C. ELEGANS:188166_S_AT
cagcagctaccaacagctttcgctgcaagtggatcctcctcgtggacaccgatcgtcgca
ccgtcgctagaagacgttggaaattcgcttctcgcagtcaatcatgctatgaagtgtggt
ggcgatggtggtggttgtgtctcaaacaacgacgctccgattctccggcaatatctcacg
aaccatcagggtcccgccacgcgaatcgacagcgttcgggagctgatgagaacgcgaacc
gactcgagatggtttgtggtgaaggatgaggatgtgaagatgcgggccgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCAGCTACCAACAGCTTTCGCTG 182 205 2629 Antisense
ACAGCTTTCGCTGCAAGTGGATCCT 433 109 2641 Antisense
ATCGTCGCACCGTCGCTAGAAGACG 581 33 2680 Antisense
TCGCTTCTCGCAGTCAATCATGCTA 123 599 2713 Antisense
TGGCGATGGTGGTGGTTGTGTCTCA 357 545 2748 Antisense
GTTGTGTCTCAAACAACGACGCTCC 536 437 2762 Antisense
TTCTCCGGCAATATCTCACGAACCA 251 693 2789 Antisense
ATATCTCACGAACCATCAGGGTCCC 281 19 2799 Antisense
GCCACGCGAATCGACAGCGTTCGGG 1 279 2824 Antisense
GAGAACGCGAACCGACTCGAGATGG 638 391 2856 Antisense
GAGGATGTGAAGATGCGGGCCGGGC 689 403 2896 Antisense
Sequence Source Affymetrix Proprietary Database