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[188163_s_at]

Description C09H5.2 /REP_DB=WormBase Gene ID /WP=CE24797 /TR=O16331 /GB=AAB65385.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 79      6grp_total > 85      4grp_total > 24      6grp_highest_sub > In      6grp_high1_sub > In      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2125
1 2 3 4 range
A 494.2
(-3)
P 		1165.3
(-1.1)
P 		1749
(0.5)
P 		2619.6
(3)
P 		2125
B 516.7
(-3)
P 		1319.3
(-0.3)
P 		1619.4
(0.8)
P 		2271.8
(3)
P 		1755
C 497.7
(-3)
P 		1437
(-0.2)
P 		1932.8
(1.3)
P 		2511.4
(3)
P 		2014
avr 502.9
(-3) 		1307.2
(-0.5) 		1767.1
(0.9) 		2467.6
(3) 		1965

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2511
1 2 3 4 5 6 range
A 697.7
(-3)
P 		1226.8
(-1)
P 		1774
(1.1)
P 		1760
(1)
P 		2091.9
(2.3)
P 		2278.4
(3)
P 		1581
B 1004.3
(-3)
P 		1358.8
(-2)
P 		1689.7
(-1.1)
P 		1987.8
(-0.3)
P 		2154.3
(0.1)
P 		3209
(3)
P 		2205
C 698.4
(-3)
P 		1228.2
(-1.6)
P 		1490.1
(-0.9)
P 		1918.9
(0.2)
P 		1900.4
(0.2)
P 		2960.5
(3)
P 		2262
avr 800.1
(-3) 		1271.3
(-1.6) 		1651.3
(-0.5) 		1888.9
(0.2) 		2048.9
(0.7) 		2816
(3) 		2016
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 509
1 2 3 4 range
A 179.9
(-3)
P 		253
(-1.4)
P 		457.2
(3)
P 		383.5
(1.4)
P 		277
B 164.8
(-3)
P 		325.8
(0)
P 		375.3
(1)
P 		484.1
(3)
P 		319
C 164.7
(-3)
P 		413.1
(-0.1)
P 		673.6
(3)
P 		423.5
(0.1)
P 		509
avr 169.8
(-3) 		330.6
(-0.1) 		502
(3) 		430.4
(1.7) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1068
1 2 3 4 5 6 range
A 128.6
(-3)
P 		436.3
(0.7)
P 		386.3
(0.1)
P 		446.4
(0.8)
P 		631.2
(3)
P 		554.7
(2.1)
P 		503
B 349.4
(-3)
P 		452.3
(-2.3)
P 		410.3
(-2.6)
P 		526.5
(-1.7)
P 		875.3
(0.7)
P 		1196.6
(3)
P 		847
C 258.9
(-3)
P 		374.8
(-2.1)
P 		379.3
(-2)
P 		385.9
(-2)
P 		615
(-0.1)
P 		991.1
(3)
P 		732
avr 245.6
(-3) 		421.1
(-1.4) 		392
(-1.7) 		452.9
(-1.1) 		707.2
(1.1) 		914.1
(3) 		669
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188163_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11279
Sequence Type Exemplar sequence
Representative Public ID C09H5.2 NCBI
Target Description C09H5.2 /REP_DB=WormBase Gene ID /WP=CE24797 /TR=O16331 /GB=AAB65385.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072682(11), NM_182347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072682 NCBI Caenorhabditis elegans C09H5.2a (ATPase) mRNA, complete cds. 11/11 A 
NM_182347 NCBI Caenorhabditis elegans C09H5.2b (ATPase) mRNA, complete cds. 11/11 A 
SNAP00000035873 ENSEMBL cdna:SNAP chromosome:CEL140:V:8078708:8082410:1 11/11 None
GENEFINDER00000035878 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8077900:8082410:1 11/11 None
C09H5.2a ENSEMBL cdna:known chromosome:CEL140:V:8078676:8082488:1 gene:C09H5.2 11/11 A 
C09H5.2b ENSEMBL cdna:known chromosome:CEL140:V:8078708:8082440:1 gene:C09H5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8078763-8082411(+) 99.91 99.91
Public Domain and Genome References
Ensembl C09H5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65385 Hypothetical protein C09H5.2a [Caenorhabditis elegans] ref|NP_505083.1| C09H5.2a [Caenorhabditis elegans] 0.0
blast AAN84877 Hypothetical protein C09H5.2b [Caenorhabditis elegans] ref|NP_872147.1| C09H5.2b [Caenorhabditis elegans] 0.0
blast CAE66142 Hypothetical protein CBG11371 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A1A1_HUMAN (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 3.7E-51
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 4.8E-58
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 9.9E-8
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.2E-10
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 1.3E-21
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 2.4E-38
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 3.7E-51
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 4.8E-58
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 9.9E-8
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.2E-10
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 1.3E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505083.1 8 102-121,126-148,292-314,329-351,879-901,944-966,983-1005,1015-1032
NP_872147.1 7 102-121,126-148,292-314,329-351,879-901,945-967,980-1002
C09H5.2a 8 102-121,126-148,292-314,329-351,879-901,944-966,983-1005,1015-1032
C09H5.2b 7 102-121,126-148,292-314,329-351,879-901,945-967,980-1002
SNAP00000035873 8 102-121,126-148,292-314,329-351,879-901,944-966,983-1005,1015-1032
GENEFINDER00000035878 9 15-37,131-150,155-177,321-343,358-380,908-930,973-995,1012-1034,1044-1061
Sequence
Target Sequence 
>C. ELEGANS:188163_S_AT
tcatctgtcttttcacatttgttccaggagtacaatatgtcttcggatcccaaccaccac
catgggagtgctggcttgtcccagtcattgtcggaatctggatctggatcttcaacgaac
tccgcaaattcggaattaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCTGTCTTTTCACATTTGTTCC 604 621 2996 Antisense
GTCTTTTCACATTTGTTCCAGGAGT 464 469 3002 Antisense
GTTCCAGGAGTACAATATGTCTTCG 174 441 3016 Antisense
GTACAATATGTCTTCGGATCCCAAC 541 461 3025 Antisense
ACAATATGTCTTCGGATCCCAACCA 655 113 3027 Antisense
GCTTGTCCCAGTCATTGTCGGAATC 581 305 3069 Antisense
TTGTCCCAGTCATTGTCGGAATCTG 127 709 3071 Antisense
CAGTCATTGTCGGAATCTGGATCTG 466 207 3077 Antisense
TCTGGATCTGGATCTTCAACGAACT 624 607 3092 Antisense
TCTTCAACGAACTCCGCAAATTCGG 224 615 3104 Antisense
CGAACTCCGCAAATTCGGAATTAGA 470 253 3111 Antisense
Sequence Source Affymetrix Proprietary Database