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[188162_at]

Description C09H5.2 /REP_DB=WormBase Gene ID /WP=CE24797 /TR=O16331 /GB=AAB65385.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 69      6grp_total > 85      4grp_total > 24      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2904
1 2 3 4 range
A 558.5
(-3)
P 		1673.3
(-0.4)
P 		2217.6
(0.8)
P 		3162.7
(3)
P 		2604
B 585.9
(-3)
P 		2039.1
(0.1)
P 		2155.1
(0.3)
P 		3436.3
(3)
P 		2850
C 531.9
(-3)
P 		1936.6
(0.3)
P 		2576.3
(1.8)
P 		3114
(3)
P 		2582
avr 558.8
(-3) 		1883
(-0) 		2316.3
(0.9) 		3237.7
(3) 		2679

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3004
1 2 3 4 5 6 range
A 1136.2
(-3)
P 		1724.3
(-1.7)
P 		2592.8
(0.3)
P 		2908.3
(1)
P 		3136
(1.5)
P 		3788.1
(3)
P 		2652
B 1290.5
(-3)
P 		1612.8
(-2.3)
P 		2681.9
(0.1)
P 		3191.8
(1.2)
P 		3019.8
(0.9)
P 		3981.1
(3)
P 		2691
C 977.1
(-3)
P 		1474.8
(-2)
P 		2262.8
(-0.4)
P 		3573.3
(2.3)
P 		2829.7
(0.8)
P 		3892.6
(3)
P 		2916
avr 1134.6
(-3) 		1604
(-2) 		2512.5
(0) 		3224.5
(1.6) 		2995.2
(1.1) 		3887.3
(3) 		2753
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 722
1 2 3 4 range
A 203.3
(-3)
P 		363.2
(-0.5)
P 		579.7
(3)
P 		463
(1.1)
P 		376
B 186.8
(-3)
P 		503.6
(0.5)
P 		499.4
(0.4)
P 		732.3
(3)
P 		546
C 176.1
(-3)
P 		556.8
(0.2)
P 		897.9
(3)
P 		525.1
(-0.1)
P 		722
avr 188.7
(-3) 		474.5
(0.6) 		659
(3) 		573.5
(1.9) 		470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1275
1 2 3 4 5 6 range
A 209.4
(-3)
P 		613.3
(0.3)
P 		564.7
(-0.1)
P 		737.6
(1.3)
P 		946.3
(3)
P 		922.3
(2.8)
P 		737
B 449
(-3)
P 		536.8
(-2.5)
P 		651.2
(-1.8)
P 		845.4
(-0.7)
P 		1226.9
(1.5)
P 		1484.5
(3)
P 		1036
C 362.2
(-3)
P 		450
(-2.4)
P 		575.9
(-1.6)
P 		718.6
(-0.7)
P 		915.7
(0.5)
P 		1303.1
(3)
P 		941
avr 340.2
(-3) 		533.4
(-1.7) 		597.3
(-1.3) 		767.2
(-0.1) 		1029.6
(1.6) 		1236.6
(3) 		896
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188162_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11279
Sequence Type Exemplar sequence
Representative Public ID C09H5.2 NCBI
Target Description C09H5.2 /REP_DB=WormBase Gene ID /WP=CE24797 /TR=O16331 /GB=AAB65385.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072682(11), NM_182347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072682 NCBI Caenorhabditis elegans C09H5.2a (ATPase) mRNA, complete cds. 11/11 A 
NM_182347 NCBI Caenorhabditis elegans C09H5.2b (ATPase) mRNA, complete cds. 11/11 None
SNAP00000035873 ENSEMBL cdna:SNAP chromosome:CEL140:V:8078708:8082410:1 11/11 None
GENEFINDER00000035878 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8077900:8082410:1 11/11 None
C09H5.2a ENSEMBL cdna:known chromosome:CEL140:V:8078676:8082488:1 gene:C09H5.2 11/11 A 
C09H5.2b ENSEMBL cdna:known chromosome:CEL140:V:8078708:8082440:1 gene:C09H5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8078763-8082411(+) 99.91 99.91
Public Domain and Genome References
Ensembl C09H5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65385 Hypothetical protein C09H5.2a [Caenorhabditis elegans] ref|NP_505083.1| C09H5.2a [Caenorhabditis elegans] 0.0
blast AAN84877 Hypothetical protein C09H5.2b [Caenorhabditis elegans] ref|NP_872147.1| C09H5.2b [Caenorhabditis elegans] 0.0
blast CAE66142 Hypothetical protein CBG11371 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A1A1_HUMAN (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 3.7E-51
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 4.8E-58
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 9.9E-8
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.2E-10
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 1.3E-21
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 2.4E-38
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 3.7E-51
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 4.8E-58
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 9.9E-8
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.2E-10
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 1.3E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505083.1 8 102-121,126-148,292-314,329-351,879-901,944-966,983-1005,1015-1032
NP_872147.1 7 102-121,126-148,292-314,329-351,879-901,945-967,980-1002
C09H5.2a 8 102-121,126-148,292-314,329-351,879-901,944-966,983-1005,1015-1032
C09H5.2b 7 102-121,126-148,292-314,329-351,879-901,945-967,980-1002
SNAP00000035873 8 102-121,126-148,292-314,329-351,879-901,944-966,983-1005,1015-1032
GENEFINDER00000035878 9 15-37,131-150,155-177,321-343,358-380,908-930,973-995,1012-1034,1044-1061
Sequence
Target Sequence 
>C. ELEGANS:188162_AT
gctgtatcgcttgcctacgaaggaccagaagcagatatcatgttgcagccaccacgtaaa
agagagacacatcttgtcacaaaagggcttatcacttacacgtacctcttcatgtcaatc
ttcatttcggttggaggtgtcgttgcatatcttctctcatattatcttaatggaatctac
ccatcggagcttgcattctcttcaaacgaccatttcaaagttggagcaagtaacttcact
acatacaacggagtcgtactgaatgccgagcaacaagtcttcatggctgctcaagcagca
gcagcattccatattgctgtagttgttggacaagcatggcatctttggatgtgtttgact
cgtcgtgtttcaatctttgttcacggaatggctaacattgttgctattcttgcagtcatc
attgatcttctcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTATCGCTTGCCTACGAAGGAC 475 295 2563 Antisense
ATATCATGTTGCAGCCACCACGTAA 135 21 2597 Antisense
GGAGGTGTCGTTGCATATCTTCTCT 313 517 2695 Antisense
TGGAATCTACCCATCGGAGCTTGCA 280 547 2733 Antisense
GCATTCTCTTCAAACGACCATTTCA 611 307 2755 Antisense
GGAGTCGTACTGAATGCCGAGCAAC 466 517 2812 Antisense
GCAACAAGTCTTCATGGCTGCTCAA 298 319 2832 Antisense
CAAGCAGCAGCAGCATTCCATATTG 701 185 2854 Antisense
TGACTCGTCGTGTTTCAATCTTTGT 125 571 2918 Antisense
CATTGTTGCTATTCTTGCAGTCATC 184 217 2958 Antisense
TGCAGTCATCATTGATCTTCTCCTC 704 577 2973 Antisense
Sequence Source Affymetrix Proprietary Database