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[188161_s_at]

Description C02C6.1 /REP_DB=WormBase Gene ID /WP=CE07833 /CHR=X /FEA=Sanger Annotation /DEF=dynamin (HINXTON) TR:Q93176 protein_id:CAB01857.1
Cluster 6grp_total > 17      4grp_total > 61      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 267.4
(3)
P 		187.3
(1.1)
A 		185.5
(1.1)
A 		9.2
(-3)
A 		258
B 252.4
(3)
P 		151.9
(0.2)
A 		217.6
(2)
A 		40.3
(-3)
A 		212
C 273.1
(3)
P 		203.1
(0.3)
A 		186.1
(-0.4)
A 		117.5
(-3)
A 		156
avr 264.3
(3) 		180.8
(0.6) 		196.4
(1) 		55.7
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 204.9
(2.6)
A 		217.4
(3)
P 		68.1
(-1.3)
A 		11
(-3)
A 		41
(-2.1)
A 		106.6
(-0.2)
A 		206
B 188.6
(3)
P 		124.1
(0.6)
A 		98.5
(-0.4)
A 		65.7
(-1.7)
A 		30.2
(-3)
A 		74.1
(-1.3)
A 		158
C 398.3
(3)
P 		117.5
(-2)
A 		96.2
(-2.4)
A 		61.7
(-3)
A 		89.7
(-2.5)
A 		68.8
(-2.9)
A 		337
avr 263.9
(3) 		153
(-0.1) 		87.6
(-1.9) 		46.1
(-3) 		53.6
(-2.8) 		83.2
(-2) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 97.3
(3)
P 		40.7
(-0.5)
A 		48.5
(-0)
A 		1.3
(-3)
A 		96
B 80.5
(3)
P 		37.5
(-0.6)
A 		50.4
(0.5)
A 		8.6
(-3)
A 		72
C 90.4
(3)
P 		58.4
(0.3)
A 		64.8
(0.8)
A 		19.8
(-3)
A 		71
avr 89.4
(3) 		45.5
(-0.3) 		54.6
(0.4) 		9.9
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 37.8
(-0.2)
A 		77.3
(3)
P 		14.8
(-2)
A 		2.8
(-3)
A 		12.4
(-2.2)
A 		26
(-1.1)
A 		75
B 65.6
(3)
P 		41.3
(0.3)
A 		23.9
(-1.7)
A 		17.4
(-2.4)
A 		12.3
(-3)
A 		27.6
(-1.3)
A 		53
C 147.6
(3)
P 		35.8
(-2)
A 		24.5
(-2.5)
A 		12.4
(-3)
A 		29
(-2.3)
A 		23
(-2.5)
A 		135
avr 83.7
(3) 		51.5
(0.3) 		21.1
(-2.2) 		10.9
(-3) 		17.9
(-2.4) 		25.5
(-1.8) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188161_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17625
Sequence Type Exemplar sequence
Representative Public ID C02C6.1 NCBI
Target Description C02C6.1 /REP_DB=WormBase Gene ID /WP=CE07833 /CHR=X /FEA=Sanger Annotation /DEF=dynamin (HINXTON) TR:Q93176 protein_id:CAB01857.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029160(11), NM_001029161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029160 NCBI Caenorhabditis elegans DYNamin related family member (dyn-1) (dyn-1) mRNA, complete cds. 11/11 None
NM_001029161 NCBI Caenorhabditis elegans DYNamin related family member (dyn-1) (dyn-1) mRNA, complete cds. 11/11 None
SNAP00000042397 ENSEMBL cdna:SNAP chromosome:CEL140:X:15568839:15572262:1 11/11 None
GENEFINDER00000042399 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15568839:15572867:1 11/11 None
C02C6.1a ENSEMBL cdna:known chromosome:CEL140:X:15568834:15573611:1 gene:C02C6.1 11/11 A 
C02C6.1b ENSEMBL cdna:known chromosome:CEL140:X:15568834:15573611:1 gene:C02C6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15568838-15572480(+) 100.0 100.0
Public Domain and Genome References
Ensembl C02C6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42251 Hypothetical protein C02C6.1b [Caenorhabditis elegans] ref|NP_001024332.1| DYNamin related family member (dyn-1) [Caenorhabditis elegans] 0.0
blast CAB01857 Hypothetical protein C02C6.1a [Caenorhabditis elegans] ref|NP_001024331.1| DYNamin related family member (dyn-1) [Caenorhabditis elegans] sp|P39055|DYN1_CAEEL Dynamin 0.0
blast AAD50438 dynamin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003130 EMBL-EBI Dynamin GTPase effector 2.4E-44
Pfam IPR000375 EMBL-EBI Dynamin central region 1.0E-126
Pfam IPR001401 EMBL-EBI Dynamin 1.0E-126
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.1E-16
Sequence
Target Sequence 
>C. ELEGANS:188161_S_AT
gatacctcgattgatccacaacttgagagacaggtggagacaatccgtaatttggttgat
tcctacatgagaatcattaccaagacaattaaggacctggttccaaaggcggtgatgcat
ttgattgttaaccagacaggtgagttcatgaaagatgaacttttggcccatctctaccaa
tgcggcgacactgatgctctcatggaggaatctcaaatagaagcccagaagcgcgaggag
atgctccgaatgtaccatgcttgcaaggaggcgctccgcattatctctgaagtcaacatg
agcacccttggcgaccagccgccgccattgccgatgtctgactaccgcccacacccatct
ggaccttcaccggtgccgcgtccggctcctgctccaccaggcggacgtcaggccccaatg
ccaccacgcggaggacccggtgccccaccaccaccaggcatgagaccaccaccaggtgcg
ccaggaggcggcggtggcatgtacccaccgttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACCTCGATTGATCCACAACTTG 618 423 1936 Antisense
ATCCGTAATTTGGTTGATTCCTACA 8 39 1978 Antisense
AGGACCTGGTTCCAAAGGCGGTGAT 632 1 2027 Antisense
TCTCTACCAATGCGGCGACACTGAT 387 611 2106 Antisense
GCGACACTGATGCTCTCATGGAGGA 441 287 2120 Antisense
GAAGCCCAGAAGCGCGAGGAGATGC 206 345 2155 Antisense
GAGATGCTCCGAATGTACCATGCTT 42 397 2173 Antisense
TACCATGCTTGCAAGGAGGCGCTCC 586 649 2188 Antisense
GCTCCGCATTATCTCTGAAGTCAAC 458 299 2208 Antisense
TGAAGTCAACATGAGCACCCTTGGC 497 575 2223 Antisense
GCGGTGGCATGTACCCACCGTTGAT 248 287 2426 Antisense
Sequence Source Affymetrix Proprietary Database