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[188159_at] ATPase

Description F02C9.3 /REP_DB=WormBase Gene ID /WP=CE19775 /TR=P91203 /GB=AAD32271.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_high1_10_10 > 02      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_total > 14      4grp_total > 38      6grp_cgc > 40      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 166.7
(3)
P 		95.2
(-0.5)
P 		42.6
(-3)
P 		118.4
(0.7)
P 		124
B 164
(3)
P 		108.6
(0.3)
P 		40.9
(-3)
P 		86.5
(-0.8)
P 		123
C 138.7
(3)
P 		93
(-1.5)
P 		77.6
(-3)
P 		95.9
(-1.2)
P 		61
avr 156.5
(3) 		98.9
(-0.4) 		53.7
(-3) 		100.3
(-0.3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 107.6
(3)
P 		100.3
(2.3)
P 		70.2
(-0.7)
P 		81.8
(0.5)
P 		52.8
(-2.4)
P 		46.6
(-3)
A 		61
B 91.3
(1.2)
P 		80.5
(-0.5)
P 		84.4
(0.1)
P 		102.9
(3)
P 		67
(-2.6)
P 		64.4
(-3)
P 		39
C 104.2
(3)
P 		100.1
(2.6)
P 		57.8
(-1.2)
M 		74
(0.3)
P 		37.3
(-3)
P 		61.6
(-0.8)
P 		67
avr 101
(3) 		93.6
(2.1) 		70.8
(-0.7) 		86.2
(1.2) 		52.4
(-3) 		57.5
(-2.4) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 60.7
(3)
P 		20.7
(-1.8)
P 		11.1
(-3)
P 		17.3
(-2.3)
P 		50
B 52.3
(3)
P 		26.8
(-0.6)
P 		9.5
(-3)
P 		18.4
(-1.8)
P 		43
C 45.9
(3)
P 		26.7
(-0.9)
P 		27
(-0.8)
P 		16.2
(-3)
P 		30
avr 53
(3) 		24.7
(-1.6) 		15.9
(-3) 		17.3
(-2.8) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 19.8
(-0.9)
P 		35.7
(3)
P 		15.3
(-2)
P 		20.7
(-0.7)
P 		15.9
(-1.9)
P 		11.3
(-3)
A 		24
B 31.8
(3)
P 		26.8
(0.3)
P 		20.5
(-3)
P 		27.2
(0.6)
P 		27.2
(0.6)
P 		24
(-1.1)
P 		11
C 38.6
(3)
P 		30.5
(1.2)
P 		14.7
(-2.4)
M 		14.9
(-2.4)
P 		12.1
(-3)
P 		20.6
(-1.1)
P 		27
avr 30.1
(2.6) 		31
(3) 		16.8
(-3) 		20.9
(-1.3) 		18.4
(-2.3) 		18.6
(-2.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15671
Sequence Type Exemplar sequence
Representative Public ID F02C9.3 NCBI
Target Description F02C9.3 /REP_DB=WormBase Gene ID /WP=CE19775 /TR=P91203 /GB=AAD32271.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071457 NCBI Caenorhabditis elegans F02C9.3 (ATPase) mRNA, complete cds. 11/11 None
SNAP00000040783 ENSEMBL cdna:SNAP chromosome:CEL140:V:3132255:3133076:1 9/11 None
GENEFINDER00000040788 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3128952:3137209:1 10/11 None
F02C9.3 ENSEMBL cdna:known chromosome:CEL140:V:3128952:3133076:1 gene:F02C9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040782 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3128951-3133076(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase
Gene Symbol tat-6
Ensembl F02C9.3
Entrez Gene 178754 Entrez gene
SwissProt P91203 EMBL-EBI
WormBase CE19775 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.992.1.S1_AT similar to ATPas, class II, type 9B cfa
CANINE_2:CFAAFFX.992.1.S1_S_AT similar to ATPas, class II, type 9B cfa
DROSOPHILA_2:1636101_A_AT dm
DROSGENOME1:154077_AT dm
DROSGENOME1:146327_AT dm
CHICKEN:GGAAFFX.8019.1.S1_AT similar to Potential phospholipid-transporting ATPase IIB gga
CHICKEN:GGAAFFX.8019.1.S1_S_AT similar to Potential phospholipid-transporting ATPase IIB gga
HG-U133_PLUS_2:214934_AT ATPase, Class II, type 9B hs
HG-U133A_2:214934_AT ATPase, Class II, type 9B hs
HG-U133A:214934_AT ATPase, Class II, type 9B hs
HG-U95AV2:38273_AT ATPase, Class II, type 9B hs
HU35KSUBA:HUM_ALU_AT ATPase, Class II, type 9B hs
HU35KSUBB:HUM_ALU_AT ATPase, Class II, type 9B hs
HU35KSUBC:HUM_ALU_AT ATPase, Class II, type 9B hs
HU35KSUBD:HUM_ALU_AT ATPase, Class II, type 9B hs
HUGENEFL:HUM_ALU_AT ATPase, Class II, type 9B hs
HC-G110:HUM_ALU_AT ATPase, Class II, type 9B hs
HU35KSUBC:RC_R41672_AT ATPase, Class II, type 9B hs
HU35KSUBD:RC_AA479950_AT ATPase, Class II, type 9B hs
U133_X3P:HS2.429537.1.S1_3P_S_AT ATPase, Class II, type 9B hs
U133_X3P:HS2.429537.1.S1_3P_AT ATPase, Class II, type 9B hs
U133_X3P:HS2.255757.1.S1_3P_AT ATPase, Class II, type 9B hs
U133_X3P:HS.91471.1.S1_3P_AT ATPase, Class II, type 9B hs
U133_X3P:HS.91471.0.S1_3P_A_AT ATPase, Class II, type 9B hs
U133_X3P:HS.105643.0.A1_3P_S_AT ATPase, Class II, type 9B hs
HG-U133_PLUS_2:1564344_AT ATPase, Class II, type 9B hs
HG-U133_PLUS_2:1568723_AT ATPase, Class II, type 9B hs
HG-U133A_2:214010_S_AT ATPase, Class II, type 9B hs
HG-U133_PLUS_2:214010_S_AT ATPase, Class II, type 9B hs
HG-U133A:214010_S_AT ATPase, Class II, type 9B hs
HG-U133_PLUS_2:237766_AT ATPase, Class II, type 9B hs
HG-U133B:237766_AT ATPase, Class II, type 9B hs
HG-U95B:49971_AT ATPase, Class II, type 9B hs
HG-U95B:49973_G_AT ATPase, Class II, type 9B hs
HG-U133_PLUS_2:232824_AT ATPase, Class II, type 9B hs
HG-U133B:232824_AT ATPase, Class II, type 9B hs
U133_X3P:HS.121343.0.S1_3P_X_AT ATPase, Class II, type 9B hs
U133_X3P:HS.121343.0.S1_3P_AT ATPase, Class II, type 9B hs
U133_X3P:232824_3P_AT ATPase, Class II, type 9B hs
HG-U133_PLUS_2:231515_AT ATPase, Class II, type 9B hs
HG-U133B:231515_AT ATPase, Class II, type 9B hs
HG-U133_PLUS_2:236762_AT ATPase, Class II, type 9B hs
HG-U133B:236762_AT ATPase, Class II, type 9B hs
HG-U133_PLUS_2:243615_AT ATPase, Class II, type 9B hs
HG-U133B:243615_AT ATPase, Class II, type 9B hs
HG-U95B:45464_AT ATPase, Class II, type 9B hs
HG-U95D:85993_I_AT ATPase, Class II, type 9B hs
HG-U95E:86267_AT ATPase, Class II, type 9B hs
U133_X3P:HS.195081.0.A1_3P_AT ATPase, Class II, type 9B hs
HU35KSUBB:RC_F02371_AT ATPase, Class II, type 9B hs
U133_X3P:HS.156775.0.A1_3P_AT ATPase, Class II, type 9B hs
MOUSE430_2:1440558_AT ATPas, class II, type 9B mm
MOE430B:1440558_AT ATPas, class II, type 9B mm
MOUSE430A_2:1450879_AT ATPas, class II, type 9B mm
MOE430A:1450879_AT ATPas, class II, type 9B mm
MOUSE430_2:1450879_AT ATPas, class II, type 9B mm
MG-U74BV2:113731_AT ATPas, class II, type 9B mm
MOE430B:1446467_AT ATPas, class II, type 9B mm
MOUSE430_2:1446467_AT ATPas, class II, type 9B mm
MOE430B:1460099_AT ATPas, class II, type 9B, mRNA (cDNA clone IMAGE:3498651) mm
MOUSE430_2:1460099_AT ATPas, class II, type 9B, mRNA (cDNA clone IMAGE:3498651) mm
MU19KSUBC:TC35095_AT ATPas, class II, type 9B, mRNA (cDNA clone IMAGE:3498651) mm
RG-U34A:U78977_AT similar to Potential phospholipid-transporting ATPase IIB rn
RG-U34A:U78977_G_AT similar to Potential phospholipid-transporting ATPase IIB rn
RG-U34B:RC_AI012671_AT similar to Potential phospholipid-transporting ATPase IIB rn
RAE230A:1370925_AT similar to Potential phospholipid-transporting ATPase IIB rn
RAT230_2:1370925_AT similar to Potential phospholipid-transporting ATPase IIB rn
RAE230A:1376019_AT Similar to Potential phospholipid-transporting ATPase IIB rn
RAT230_2:1376019_AT Similar to Potential phospholipid-transporting ATPase IIB rn
RAE230A:1399000_AT Similar to Potential phospholipid-transporting ATPase IIB rn
RAT230_2:1399000_AT Similar to Potential phospholipid-transporting ATPase IIB rn
YEAST_2:1776879_AT Protein involved in the retrograde transport from the Golgi complex to the ER and the endosomal membrane traffic; putative aminophospholipid translocase; member of the highly conserved Drs2 family of P-type ATPases Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
15662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism inferred from electronic annotation QuickGO AmiGO
16887 ATPase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD32271 Hypothetical protein F02C9.3 [Caenorhabditis elegans] ref|NP_503858.1| F02C9.3 [Caenorhabditis elegans] 0.0
blast CAB03079 Hypothetical protein F36H2.1a [Caenorhabditis elegans] emb|CAA16284.2| Hypothetical protein F36H2.1a [Caenorhabditis elegans] ref|NP_001021457.1| Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-5) [Caenorhabditis elegans] 0.0
blast CAE70374 Hypothetical protein CBG16933 [Caenorhabditis briggsae] 0.0
blast AAD32271 Hypothetical protein F02C9.3 [Caenorhabditis elegans] ref|NP_503858.1| F02C9.3 [Caenorhabditis elegans] 1.0E-106
Protein Families
Method ID Description E-Value
ec A8B2_HUMAN (P98198) Potential phospholipid-transporting ATPase ID (EC 3.6.3.1) (ATPase class I type 8B member 2) 0.0
ec A10D_HUMAN (Q9P241) Potential phospholipid-transporting ATPase VD (EC 3.6.3.1) (ATPVD) 1.0E-156
ec A10D_HUMAN (Q9P241) Potential phospholipid-transporting ATPase VD (EC 3.6.3.1) (ATPVD) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503858.1 10 108-130,140-162,343-362,366-388,863-885,889-911,942-964,968-987,994-1016,1026-1048
F02C9.3 10 108-130,140-162,343-362,366-388,863-885,889-911,942-964,968-987,994-1016,1026-1048
SNAP00000040783 6 21-43,47-64,95-117,121-140,147-169,179-201
GENEFINDER00000040788 11 108-130,140-162,343-362,366-388,863-885,889-911,942-964,968-987,994-1016,1026-1048,1055-1077
Sequence
Target Sequence 
>C. ELEGANS:188159_AT
ggtcatgcacattggctcagtttataatgcatcgcggtctcctcatctcaatagtacaag
ccatattctcctgtgtattctacttcgtcgccgtctccttatatcaaggtgttttgatgg
tcgccttcacatcatgctatacccttctaccagtgttctccctgattgccgaccgtgacg
tcaccgccacaaatgcgctaacatatccggagctgtacaaggagttggtgaaaggaagaa
cgttatcttacaaaacattttttatttgggtttttatatcgatttatcaaggtgcggtaa
taatgtacggtgcactactaattttcgatacagacattctgcatattgtctcaatttctt
tctcagctctaatcgcaactgagcttatcatggtagccttgacagtgcatacctggcact
ggttgatgctagttgctcaggctctatcgctaggactctacgtggtgtccttgataacct
tagatcagtttttcgatcggaaatttgtattttcatgggtcttcatcaccaaaaccacag
ctatcactgtagtttcctctctcccattgtattttatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCATGCACATTGGCTCAGTTTAT 557 503 2579 Antisense
AGTTTATAATGCATCGCGGTCTCCT 203 63 2597 Antisense
AAGCCATATTCTCCTGTGTATTCTA 167 149 2636 Antisense
TATTGTCTCAATTTCTTTCTCAGCT 500 665 2922 Antisense
TTCTTTCTCAGCTCTAATCGCAACT 317 689 2934 Antisense
GTAGCCTTGACAGTGCATACCTGGC 137 457 2971 Antisense
GTTGATGCTAGTTGCTCAGGCTCTA 166 439 3000 Antisense
CTCTATCGCTAGGACTCTACGTGGT 692 229 3020 Antisense
ATGGGTCTTCATCACCAAAACCACA 63 51 3093 Antisense
ACAGCTATCACTGTAGTTTCCTCTC 304 109 3115 Antisense
TCCTCTCTCCCATTGTATTTTATCA 454 593 3133 Antisense
Sequence Source Affymetrix Proprietary Database