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[188158_at]

Description T17H7.4 /REP_DB=WormBase Gene ID /WP=CE13730 /GEN=gei-16 /TR=Q22533 /GB=AAC48173.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      6grp_highest_nonorm > 30      6grp_total > 15      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1024
1 2 3 4 range
A 747.6
(1.2)
P 		996.7
(3)
P 		746.2
(1.2)
P 		169.1
(-3)
A 		828
B 1151.4
(3)
P 		830.2
(1.1)
P 		632.8
(-0.1)
P 		161.2
(-3)
M 		990
C 754.4
(1.3)
P 		1004.6
(3)
P 		708
(1)
P 		127.2
(-3)
A 		877
avr 884.5
(2.6) 		943.8
(3) 		695.7
(1.1) 		152.5
(-3) 		791

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1523
1 2 3 4 5 6 range
A 897.8
(1.4)
P 		1108
(3)
P 		597.4
(-1)
P 		647.3
(-0.6)
P 		535.8
(-1.4)
P 		336.1
(-3)
P 		772
B 1012
(2.9)
P 		1026.5
(3)
P 		570.8
(-0.9)
P 		379.2
(-2.5)
P 		532.5
(-1.2)
P 		323.3
(-3)
P 		703
C 1773.9
(3)
P 		997.5
(-0.1)
P 		684.1
(-1.3)
P 		338.4
(-2.7)
P 		587.7
(-1.7)
P 		250.5
(-3)
P 		1523
avr 1227.9
(3) 		1044
(1.8) 		617.4
(-1) 		455
(-2) 		552
(-1.4) 		303.3
(-3) 		925
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 272.2
(3)
P 		216.4
(1.6)
P 		195.1
(1.1)
P 		24.8
(-3)
A 		247
B 367.2
(3)
P 		205
(0.1)
P 		146.6
(-1)
P 		34.3
(-3)
M 		333
C 249.7
(2.1)
P 		288.8
(3)
P 		246.8
(2.1)
P 		21.4
(-3)
A 		267
avr 296.4
(3) 		236.7
(1.7) 		196.2
(0.8) 		26.8
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 589
1 2 3 4 5 6 range
A 165.5
(-1.4)
P 		394
(3)
P 		130.1
(-2.1)
P 		164.2
(-1.4)
P 		161.7
(-1.5)
P 		81.8
(-3)
P 		312
B 352.1
(3)
P 		341.7
(2.8)
P 		138.6
(-2.1)
P 		100.4
(-3)
P 		216.4
(-0.2)
P 		120.6
(-2.5)
P 		252
C 657.5
(3)
P 		304.4
(-0.6)
P 		174.1
(-1.9)
P 		68.1
(-3)
P 		190.2
(-1.8)
P 		83.9
(-2.8)
P 		589
avr 391.7
(3) 		346.7
(2.1) 		147.6
(-1.9) 		110.9
(-2.7) 		189.4
(-1.1) 		95.4
(-3) 		296
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8124
Sequence Type Exemplar sequence
Representative Public ID T17H7.4 NCBI
Target Description T17H7.4 /REP_DB=WormBase Gene ID /WP=CE13730 /GEN=gei-16 /TR=Q22533 /GB=AAC48173.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171070(11), NM_171067(11), NM_064843(11), NM_064844(11), NM_064845(11), NM_171068(11), NM_171071(11), NM_171069(11), NM_171859(11), NM_064847(11), NM_001027598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171070 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_171067 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_064843 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_064844 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_064845 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_171068 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_171071 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_171069 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_171859 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_064847 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
NM_001027598 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
SNAP00000004136 ENSEMBL cdna:SNAP chromosome:CEL140:III:727633:731919:-1 11/11 None
GENEFINDER00000004144 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:727830:731919:-1 11/11 None
T17H7.4g.1 ENSEMBL cdna:known chromosome:CEL140:III:727215:732286:-1 gene:T17H7.4 11/11 A 
T17H7.4g.2 ENSEMBL cdna:known chromosome:CEL140:III:727215:743311:-1 gene:T17H7.4 11/11 A 
T17H7.4k ENSEMBL cdna:known chromosome:CEL140:III:727633:743337:-1 gene:T17H7.4 11/11 None
T17H7.4a ENSEMBL cdna:known chromosome:CEL140:III:727633:746532:-1 gene:T17H7.4 11/11 None
T17H7.4f.5 ENSEMBL cdna:known chromosome:CEL140:III:727633:731943:-1 gene:T17H7.4 11/11 None
T17H7.4i ENSEMBL cdna:known chromosome:CEL140:III:727633:732171:-1 gene:T17H7.4 11/11 None
T17H7.4f.2 ENSEMBL cdna:known chromosome:CEL140:III:727633:732329:-1 gene:T17H7.4 11/11 None
T17H7.4f.3 ENSEMBL cdna:known chromosome:CEL140:III:727633:730432:-1 gene:T17H7.4 11/11 None
T17H7.4l ENSEMBL cdna:known chromosome:CEL140:III:727633:730217:-1 gene:T17H7.4 11/11 None
T17H7.4c ENSEMBL cdna:known chromosome:CEL140:III:727633:746532:-1 gene:T17H7.4 11/11 None
T17H7.4f.4 ENSEMBL cdna:known chromosome:CEL140:III:727633:732197:-1 gene:T17H7.4 11/11 None
T17H7.4j ENSEMBL cdna:known chromosome:CEL140:III:727633:752394:-1 gene:T17H7.4 11/11 None
T17H7.4b.1 ENSEMBL cdna:known chromosome:CEL140:III:727633:746685:-1 gene:T17H7.4 11/11 None
T17H7.4b.2 ENSEMBL cdna:known chromosome:CEL140:III:727633:746685:-1 gene:T17H7.4 11/11 None
T17H7.4e ENSEMBL cdna:known chromosome:CEL140:III:727633:732171:-1 gene:T17H7.4 11/11 None
T17H7.4b.3 ENSEMBL cdna:known chromosome:CEL140:III:727633:752420:-1 gene:T17H7.4 11/11 None
T17H7.4h ENSEMBL cdna:known chromosome:CEL140:III:727633:732171:-1 gene:T17H7.4 11/11 None
T17H7.4f.1 ENSEMBL cdna:known chromosome:CEL140:III:727633:731799:-1 gene:T17H7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175227 12 11 NM_001027598 188158_at (11)
NM_064843 188158_at (11)
NM_064844 188158_at (11)
NM_064845 188158_at (11)
NM_064846 181612_at (11)
NM_064847 188158_at (11)
NM_171067 188158_at (11)
NM_171068 188158_at (11)
NM_171069 188158_at (11)
NM_171070 174770_at (11), 188158_at (11)
NM_171071 188158_at (11)
NM_171859 188158_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:727632-740065(-) 100.0 100.0
Public Domain and Genome References
Ensembl T17H7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM97958 Gex interacting protein protein 16, isoform j [Caenorhabditis elegans] ref|NP_741076.1| GEX Interacting protein family member (gei-16) [Caenorhabditis elegans] 0.0
blast AAK77638 Gex interacting protein protein 16, isoform a [Caenorhabditis elegans] ref|NP_497245.1| GEX Interacting protein family member (gei-16) [Caenorhabditis elegans] 0.0
blast AAK77640 Gex interacting protein protein 16, isoform c [Caenorhabditis elegans] ref|NP_497246.1| GEX Interacting protein family member (gei-16) [Caenorhabditis elegans] 0.0
blast AAK77639 Gex interacting protein protein 16, isoform b [Caenorhabditis elegans] ref|NP_497244.1| GEX Interacting protein family member (gei-16) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188158_AT
gtggcgagcttcagtacgtgccaaacggagaggtccgtcaatcgttctatcgtgacggaa
gcaatggtggacagcgcatgcacaagagttattctacccgcgatgtcttcactggagatg
gttatgacgatcgccgctcagtttcctccttccgtcgtggaagccagcaacaggtctccc
cattcgttgaatttccaccaaccctcccaagacgcggaggtggcggtgattaccgtcgcg
aggaagacgcatacttccgcccggtcagcaaatcccgcagctacgccgattgggacgacg
ctggtcgtgctggcatgggtcgtgaggtacgtcgttacgacgatgacatgagccgactcg
aggcagagttccgtgattcgcttttgatgccaatgccagctggtaatatgaatgagcgag
atcatagaaccgaacaattaccaggtggatatgaaacattcaacaaggagagacatgcga
atagtggacgacgctccggtcgtgacggaaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCGAGCTTCAGTACGTGCCAAA 122 493 1250 Antisense
GGTCCGTCAATCGTTCTATCGTGAC 588 501 1281 Antisense
GCACAAGAGTTATTCTACCCGCGAT 483 317 1329 Antisense
GAGATGGTTATGACGATCGCCGCTC 13 397 1364 Antisense
TCCCCATTCGTTGAATTTCCACCAA 44 597 1426 Antisense
GGAGGTGGCGGTGATTACCGTCGCG 357 515 1465 Antisense
CGAGGAAGACGCATACTTCCGCCCG 472 249 1488 Antisense
CAGCTACGCCGATTGGGACGACGCT 544 201 1527 Antisense
GCAGAGTTCCGTGATTCGCTTTTGA 150 303 1612 Antisense
TCGCTTTTGATGCCAATGCCAGCTG 708 595 1627 Antisense
GACGCTCCGGTCGTGACGGAAAGCC 123 381 1739 Antisense
Sequence Source Affymetrix Proprietary Database