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[188157_at]

Description F43D9.5 /REP_DB=WormBase Gene ID /WP=CE00995 /GEN=taf-7.3 /TR=Q20361 /GB=CAA84701.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 05      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 88.9
(-2)
A 		64.5
(-3)
A 		64.6
(-3)
A 		204.6
(3)
A 		140
B 90
(-0.3)
A 		72.5
(-1)
A 		17
(-3)
A 		181.3
(3)
A 		164
C 104.8
(3)
A 		14.3
(-3)
A 		98.4
(2.6)
A 		102
(2.8)
A 		91
avr 94.6
(-0.6) 		50.4
(-3) 		60
(-2.5) 		162.6
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 107.4
(1.2)
A 		76.1
(-1.4)
A 		57.5
(-3)
A 		67
(-2.2)
A 		116.3
(2)
A 		128.3
(3)
M 		71
B 101.7
(-0)
A 		37.7
(-3)
A 		84.6
(-0.8)
A 		49.5
(-2.5)
A 		121.7
(0.9)
M 		166.5
(3)
P 		129
C 79.5
(-2)
A 		58.4
(-3)
A 		85.7
(-1.7)
A 		117.6
(-0.3)
A 		117.5
(-0.3)
A 		189.2
(3)
P 		131
avr 96.2
(-0.8) 		57.4
(-3) 		75.9
(-1.9) 		78
(-1.8) 		118.5
(0.5) 		161.3
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 32.4
(3)
A 		14
(-3)
A 		16.9
(-2.1)
A 		29.9
(2.2)
A 		18
B 28.7
(1.3)
A 		17.9
(-0.6)
A 		3.9
(-3)
A 		38.6
(3)
A 		35
C 34.7
(3)
A 		4.1
(-3)
A 		34.3
(2.9)
A 		17.2
(-0.4)
A 		31
avr 31.9
(3) 		12
(-3) 		18.4
(-1.1) 		28.6
(2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 19.8
(-1.1)
A 		27.1
(0.9)
A 		12.5
(-3)
A 		17
(-1.8)
A 		35.1
(3)
A 		31.2
(2)
M 		23
B 35.4
(-0.2)
A 		12.6
(-3)
A 		20.5
(-2)
A 		13.1
(-2.9)
A 		49.5
(1.5)
M 		62.1
(3)
P 		50
C 29.5
(-1.5)
A 		17.8
(-3)
A 		21.8
(-2.5)
A 		23.6
(-2.2)
A 		38
(-0.3)
A 		63.3
(3)
P 		46
avr 28.2
(-1.2) 		19.2
(-2.8) 		18.3
(-2.9) 		17.9
(-3) 		40.9
(1) 		52.2
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188157_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6901
Sequence Type Exemplar sequence
Representative Public ID F43D9.5 NCBI
Target Description F43D9.5 /REP_DB=WormBase Gene ID /WP=CE00995 /GEN=taf-7.3 /TR=Q20361 /GB=CAA84701.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066914(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066914 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-11.3) (taf-11.3) mRNA, complete cds. 9/11 None
SNAP00000024070 ENSEMBL cdna:SNAP chromosome:CEL140:III:10503954:10505127:-1 10/11 None
GENEFINDER00000024078 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10503954:10505127:-1 10/11 None
F43D9.5 ENSEMBL cdna:known chromosome:CEL140:III:10503954:10505106:-1 gene:F43D9.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10503949-10505123(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol taf-11.3
Ensembl F43D9.5
Entrez Gene 260198 Entrez gene
SwissProt Q20361 EMBL-EBI
WormBase CE31808 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45449 regulation of transcription inferred from electronic annotation QuickGO AmiGO
45944 positive regulation of transcription from RNA polymerase II promoter inferred from sequence similarity QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5669 transcription factor TFIID complex inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3704 specific RNA polymerase II transcription factor activity inferred from sequence similarity QuickGO AmiGO
5515 protein binding inferred from sequence similarity QuickGO AmiGO
17025 TATA-binding protein binding inferred from sequence similarity QuickGO AmiGO
3713 transcription coactivator activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84701 Hypothetical protein F43D9.5 [Caenorhabditis elegans] ref|NP_499315.2| TAF (TBP-associated transcription factor) family member (taf-11.3) [Caenorhabditis elegans] 2.0E-86
blast CAA84701 Hypothetical protein F43D9.5 [Caenorhabditis elegans] ref|NP_499315.2| TAF (TBP-associated transcription factor) family member (taf-11.3) [Caenorhabditis elegans] 3.0E-86
blast CAA84701 Hypothetical protein F43D9.5 [Caenorhabditis elegans] ref|NP_499315.2| TAF (TBP-associated transcription factor) family member (taf-11.3) [Caenorhabditis elegans] 5.0E-61
blast CAE71455 Hypothetical protein CBG18373 [Caenorhabditis briggsae] 3.0E-23
blast AAB00597 Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans] ref|NP_508727.1| TAF (TBP-associated transcription factor) family member (taf-11.1) [Caenorhabditis elegans] 5.0E-19
blast AAB00597 Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans] ref|NP_508727.1| TAF (TBP-associated transcription factor) family member (taf-11.1) [Caenorhabditis elegans] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR006809 EMBL-EBI TAFII28-like protein 2.0E-23
Pfam IPR006809 EMBL-EBI TAFII28-like protein 2.0E-23
Pfam IPR006809 EMBL-EBI TAFII28-like protein 2.0E-23
Sequence
Target Sequence 
>C. ELEGANS:188157_AT
aaaacagctgccgatgacctatttggcggtctcagcgacagtgacagcgacgatgagata
gttccgacctcagttttgaaggatttggagatgagcagtgaagaagacgaaattgctgaa
ttatcaaaggatactcctccagagatgttcatcggagatcttgtggaagaagctgtggag
ctccgtggagctctaaatgagcaagaccgtccagttcaaccgtatcatatcactcgagct
ttcgacaaacttttggccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACAGCTGCCGATGACCTATTTG 139 131 19 Antisense
GACCTATTTGGCGGTCTCAGCGACA 373 379 34 Antisense
CGGTCTCAGCGACAGTGACAGCGAC 296 243 45 Antisense
AGCGACGATGAGATAGTTCCGACCT 477 77 64 Antisense
GATAGTTCCGACCTCAGTTTTGAAG 609 421 75 Antisense
GATACTCCTCCAGAGATGTTCATCG 578 423 148 Antisense
AGCTCCGTGGAGCTCTAAATGAGCA 247 81 197 Antisense
ATGAGCAAGACCGTCCAGTTCAACC 446 45 215 Antisense
GTCCAGTTCAACCGTATCATATCAC 480 475 227 Antisense
CGTATCATATCACTCGAGCTTTCGA 512 247 239 Antisense
GAGCTTTCGACAAACTTTTGGCCGA 183 373 254 Antisense
Sequence Source Affymetrix Proprietary Database