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[188156_at] carboxylesterase

Description C52A10.1 /REP_DB=WormBase Gene ID /WP=CE20590 /GB=AAK68261.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 45      4grp_high_8_8 > 10      6grp_highest_nonorm > 60      6grp_total > 25      4grp_total > 15      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 349.4
(3)
P 		191.2
(-3)
P 		208.3
(-2.4)
P 		324.8
(2.1)
P 		158
B 381.6
(2.5)
P 		205
(-2.8)
P 		199.8
(-3)
P 		398.5
(3)
P 		199
C 332.6
(2.6)
P 		219.1
(-3)
P 		218.7
(-3)
P 		341.5
(3)
P 		123
avr 354.5
(3) 		205.1
(-3) 		208.9
(-2.8) 		354.9
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 591
1 2 3 4 5 6 range
A 640.8
(3)
P 		475.9
(0.7)
P 		453.6
(0.3)
P 		299.7
(-1.8)
P 		221.1
(-3)
P 		217.7
(-3)
P 		423
B 786.4
(3)
P 		559.4
(0.6)
P 		525.5
(0.2)
P 		364.1
(-1.5)
P 		251.5
(-2.7)
P 		224.7
(-3)
P 		562
C 548
(3)
P 		549.5
(3)
P 		318.2
(-0.9)
P 		280.4
(-1.6)
P 		195.2
(-3)
P 		272.5
(-1.7)
P 		354
avr 658.4
(3) 		528.3
(1.2) 		432.4
(-0.1) 		314.7
(-1.7) 		222.6
(-3) 		238.3
(-2.8) 		436
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 127.2
(3)
P 		41.5
(-3)
P 		54.5
(-2.1)
P 		47.5
(-2.6)
P 		86
B 121.7
(3)
P 		50.6
(-2.7)
P 		46.3
(-3)
P 		84.9
(0.1)
P 		75
C 110.1
(3)
P 		63
(-2.4)
P 		76.2
(-0.9)
P 		57.6
(-3)
P 		53
avr 119.7
(3) 		51.7
(-3) 		59
(-2.4) 		63.3
(-2) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 118.1
(0.4)
P 		169.3
(3)
P 		98.8
(-0.6)
P 		76
(-1.8)
P 		66.7
(-2.3)
P 		53
(-3)
P 		116
B 273.6
(3)
P 		186.2
(0.2)
P 		127.6
(-1.6)
P 		96.4
(-2.6)
P 		102.2
(-2.4)
P 		83.8
(-3)
P 		190
C 203.1
(3)
P 		167.7
(1.6)
P 		81
(-2)
P 		56.4
(-3)
P 		63.2
(-2.7)
P 		91.2
(-1.6)
P 		147
avr 198.3
(3) 		174.4
(1.8) 		102.5
(-1.7) 		76.3
(-3) 		77.4
(-2.9) 		76
(-3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12069
Sequence Type Exemplar sequence
Representative Public ID C52A10.1 NCBI
Target Description C52A10.1 /REP_DB=WormBase Gene ID /WP=CE20590 /GB=AAK68261.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071996 NCBI Caenorhabditis elegans C52A10.1 (carboxylesterase) mRNA, complete cds. 11/11 None
SNAP00000017568 ENSEMBL cdna:SNAP chromosome:CEL140:V:5230331:5236923:-1 10/11 None
GENEFINDER00000017572 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5230335:5233666:-1 11/11 None
C52A10.1 ENSEMBL cdna:known chromosome:CEL140:V:5230294:5233700:-1 gene:C52A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5230330-5233666(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Ensembl C52A10.1
Entrez Gene 178909 Entrez gene
SwissProt Q95YC4 EMBL-EBI
WormBase CE29233 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68261 Hypothetical protein C52A10.1 [Caenorhabditis elegans] ref|NP_504397.1| C52A10.1 [Caenorhabditis elegans] 0.0
blast CAE64096 Hypothetical protein CBG08703 [Caenorhabditis briggsae] 0.0
blast AAB65983 Hypothetical protein B0238.1 [Caenorhabditis elegans] ref|NP_504400.1| B0238.1 [Caenorhabditis elegans] 0.0
blast AAK68262 Hypothetical protein C52A10.2 [Caenorhabditis elegans] ref|NP_504398.1| C52A10.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188156_AT
gacttatacagctcatcagcgactcgtggttcaacatcggcgctcttgaaaccgtaaaaa
ccagcacaaagtacggaagcaacgcgtacctcggttcattcgactactataacatgggct
caaatgatccatatgccacgtggttcccattcaaagcagccaatcatggatcggagctca
agtacatgttgggagaaggaatggggaaatttagtccgattgaagaagaattcaaagtaa
ttgatatgatggggactttaacggctaattttgtgaaatatggaaacccaaacggaatca
atgggcccgagctttggaaaaagtatacccctgaaaaaccatattcgtacttcaaaattg
actatcccaaaagtgaaatgcgcgacaacttccaggatggaaggctgaaactcttcgagg
acatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTATACAGCTCATCAGCGACTC 41 373 1151 Antisense
CAGCGACTCGTGGTTCAACATCGGC 620 197 1167 Antisense
CAACATCGGCGCTCTTGAAACCGTA 338 139 1182 Antisense
GTACGGAAGCAACGCGTACCTCGGT 689 457 1221 Antisense
GTACCTCGGTTCATTCGACTACTAT 138 459 1236 Antisense
AATGATCCATATGCCACGTGGTTCC 227 165 1273 Antisense
GTTCCCATTCAAAGCAGCCAATCAT 666 441 1293 Antisense
GCAGCCAATCATGGATCGGAGCTCA 124 315 1306 Antisense
GAATCAATGGGCCCGAGCTTTGGAA 409 327 1445 Antisense
GTGAAATGCGCGACAACTTCCAGGA 97 483 1523 Antisense
AAGGCTGAAACTCTTCGAGGACATT 92 161 1551 Antisense
Sequence Source Affymetrix Proprietary Database