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[188154_s_at]

Description F56A11.1 /REP_DB=WormBase Gene ID /WP=CE28458 /GEN=gex-2 /TR=O44518 /GB=AAB92078.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 70      6grp_total > 02      4grp_total > 55      6grp_highest_sub > 02      6grp_cgc > 43      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 393.9
(3)
P 		333.6
(0)
P 		315
(-0.9)
P 		273.3
(-3)
P 		121
B 311.8
(3)
P 		255.8
(-1.5)
P 		236.3
(-3)
P 		271.4
(-0.2)
P 		76
C 381.4
(2.3)
P 		245.7
(-3)
P 		398.3
(3)
P 		330.1
(0.3)
P 		153
avr 362.4
(3) 		278.4
(-3) 		316.5
(-0.3) 		291.6
(-2.1) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 280.1
(0.1)
P 		426.1
(3)
P 		119.4
(-3)
P 		250.9
(-0.4)
P 		247.6
(-0.5)
P 		261.7
(-0.2)
P 		307
B 331.6
(2.2)
P 		356.9
(3)
P 		225
(-1.2)
P 		195
(-2.2)
P 		186.8
(-2.5)
P 		169.7
(-3)
P 		187
C 355.4
(3)
P 		299.3
(1.2)
P 		355.5
(3)
P 		223.7
(-1.3)
P 		232.9
(-1)
P 		169.9
(-3)
P 		186
avr 322.4
(1.6) 		360.8
(3) 		233.3
(-1.8) 		223.2
(-2.1) 		222.4
(-2.2) 		200.4
(-3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 143.4
(3)
P 		72.4
(-1.1)
P 		82.4
(-0.5)
P 		40
(-3)
P 		103
B 99.4
(3)
P 		63.2
(-1.9)
P 		54.8
(-3)
P 		57.8
(-2.6)
P 		45
C 126.2
(2.1)
P 		70.6
(-1.9)
P 		138.8
(3)
P 		55.7
(-3)
P 		83
avr 123
(3) 		68.7
(-1.5) 		92
(0.4) 		51.2
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 51.6
(-1.8)
P 		151.5
(3)
P 		26
(-3)
P 		63.6
(-1.2)
P 		74.7
(-0.7)
P 		63.7
(-1.2)
P 		126
B 115.4
(2.7)
P 		118.8
(3)
P 		54.6
(-2.7)
P 		51.6
(-3)
P 		75.9
(-0.8)
P 		63.3
(-2)
P 		67
C 131.7
(3)
P 		91.3
(0.2)
P 		90.5
(0.1)
P 		45
(-3)
P 		75.3
(-0.9)
P 		56.9
(-2.2)
P 		87
avr 99.6
(1.1) 		120.5
(3) 		57
(-2.7) 		53.4
(-3) 		75.3
(-1) 		61.3
(-2.3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188154_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10612
Sequence Type Exemplar sequence
Representative Public ID F56A11.1 NCBI
Target Description F56A11.1 /REP_DB=WormBase Gene ID /WP=CE28458 /GEN=gex-2 /TR=O44518 /GB=AAB92078.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067548 NCBI Caenorhabditis elegans Gut on EXterior family member (gex-2) (gex-2) mRNA, complete cds. 11/11 None
F56A11.1 ENSEMBL cdna:known chromosome:CEL140:IV:572723:583731:1 gene:F56A11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007074 8/11 Cross Hyb Matching Probes None
SNAP00000042860 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:572775-583357(+) 97.33 98.14
Public Domain and Genome References
Gene Title
Gene Symbol gex-2
Ensembl F56A11.1
Entrez Gene 176885 Entrez gene
SwissProt O44518 EMBL-EBI
WormBase CE31351 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250041_AT expressed protein at
CANINE:1586024_AT similar to p53 inducible protein cfa
CANINE_2:CFA.11787.1.A1_AT similar to p53 inducible protein cfa
CANINE_2:CFA.11787.1.A1_S_AT similar to p53 inducible protein cfa
CANINE_2:CFAAFFX.26810.1.S1_S_AT similar to p53 inducible protein cfa
DROSOPHILA_2:1626993_AT Saccharomyces cerevisiae UAS construct a of Schenck dm
DROSGENOME1:141285_AT Saccharomyces cerevisiae UAS construct a of Schenck dm
CHICKEN:GGAAFFX.2380.1.S1_AT similar to p53 inducible protein gga
HG-U133_PLUS_2:220999_S_AT cytoplasmic FMR1 interacting protein 2 hs
HG-U133A:220999_S_AT cytoplasmic FMR1 interacting protein 2 hs
HG-U133A_2:220999_S_AT cytoplasmic FMR1 interacting protein 2 hs
HG-U133_PLUS_2:215785_S_AT cytoplasmic FMR1 interacting protein 2 hs
HG-U133A_2:215785_S_AT cytoplasmic FMR1 interacting protein 2 hs
HG-U133A:215785_S_AT cytoplasmic FMR1 interacting protein 2 hs
HU35KSUBB:RC_R42547_S_AT cytoplasmic FMR1 interacting protein 2 hs
HUGENEFL:L47738_AT cytoplasmic FMR1 interacting protein 2 hs
U133_X3P:G13562115_3P_S_AT cytoplasmic FMR1 interacting protein 2 hs
U133_X3P:HS.258503.2.A1_3P_A_AT cytoplasmic FMR1 interacting protein 2 hs
HG-U95AV2:37579_AT cytoplasmic FMR1 interacting protein 2 hs
HG-U95C:60441_AT cytoplasmic FMR1 interacting protein 2 hs
U133_X3P:HS.306854.0.A1_3P_AT Cytoplasmic FMR1 interacting protein 2 hs
HG-U133_PLUS_2:234143_AT Cytoplasmic FMR1 interacting protein 2 hs
HG-U133B:234143_AT Cytoplasmic FMR1 interacting protein 2 hs
HG-U95C:51570_AT Cytoplasmic FMR1 interacting protein 2 hs
HG-U95D:74135_R_AT Cytoplasmic FMR1 interacting protein 2 hs
HG-U95D:87382_I_AT Cytoplasmic FMR1 interacting protein 2 hs
HG-U95D:87384_R_AT Cytoplasmic FMR1 interacting protein 2 hs
MG-U74AV2:102009_AT cytoplasmic FMR1 interacting protein 2 mm
MOE430A:1449273_AT cytoplasmic FMR1 interacting protein 2 mm
MOUSE430A_2:1449273_AT cytoplasmic FMR1 interacting protein 2 mm
MOUSE430_2:1449273_AT cytoplasmic FMR1 interacting protein 2 mm
MOE430B:1442167_AT cytoplasmic FMR1 interacting protein 2 mm
MOUSE430_2:1442167_AT cytoplasmic FMR1 interacting protein 2 mm
MG-U74CV2:129049_AT Cytoplasmic FMR1 interacting protein 2, mRNA (cDNA clone IMAGE:5365148) mm
MOE430B:1444351_AT Cytoplasmic FMR1 interacting protein 2, mRNA (cDNA clone IMAGE:5365148) mm
MOUSE430_2:1444351_AT Cytoplasmic FMR1 interacting protein 2, mRNA (cDNA clone IMAGE:5365148) mm
MU19KSUBA:TC24143_AT Cytoplasmic FMR1 interacting protein 2, mRNA (cDNA clone IMAGE:5365148) mm
MU19KSUBB:TC28738_AT Cytoplasmic FMR1 interacting protein 2, mRNA (cDNA clone IMAGE:5365148) mm
MU19KSUBB:TC28738_G_AT Cytoplasmic FMR1 interacting protein 2, mRNA (cDNA clone IMAGE:5365148) mm
MU19KSUBB:TC32273_AT Cytoplasmic FMR1 interacting protein 2, mRNA (cDNA clone IMAGE:5365148) mm
Protein Similarities
Method ID Description E-Value
blast AAB92078 Gut on exterior protein 2 [Caenorhabditis elegans] ref|NP_499949.2| Gut on EXterior family member (gex-2) [Caenorhabditis elegans] dbj|BAB70472.1| rac effector [Caenorhabditis elegans] 0.0
blast CAE58472 Hypothetical protein CBG01612 [Caenorhabditis briggsae] 0.0
blast XP_395632 PREDICTED: similar to CG4931-PA [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008081 EMBL-EBI Cytoplasmic fragile X mental retardation protein interacting protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188154_S_AT
aagtactcgagaatccatttgaccgagataatcgacaaaatcagtccggatgacggccag
gcggcgattgcaaaagacgccgagctgatgacaaaggagcgactgtgctgtggattgaat
gcctttgagaactttttggttcgaattaagcaaatgctcgcagctgacgatatctggact
ggcggctaccctacaaacggtgtattctggattgacgaatgtgtcgagtggtaccgtgtc
tattcagctctacagttcttcttgtgccaaccgacgcgcgatgataatgaagtttatgca
gaagaactgttcggcgactcgttgcaatggggaggcctaacactgatcacattactggga
caacatcgaagatttgaagtgctcgatttctgctatcacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTACTCGAGAATCCATTTGACCG 588 155 3694 Antisense
AAATCAGTCCGGATGACGGCCAGGC 617 117 3731 Antisense
GACGGCCAGGCGGCGATTGCAAAAG 657 375 3745 Antisense
GCGACTGTGCTGTGGATTGAATGCC 494 289 3792 Antisense
GGCTACCCTACAAACGGTGTATTCT 220 491 3877 Antisense
GTGTCGAGTGGTACCGTGTCTATTC 269 485 3914 Antisense
CTATTCAGCTCTACAGTTCTTCTTG 694 223 3933 Antisense
TGCCAACCGACGCGCGATGATAATG 260 587 3958 Antisense
GGCGACTCGTTGCAATGGGGAGGCC 3 541 4006 Antisense
GAGGCCTAACACTGATCACATTACT 86 405 4025 Antisense
AAGTGCTCGATTTCTGCTATCACCT 682 157 4070 Antisense
Sequence Source Affymetrix Proprietary Database