[Home] | [Total List]

[188149_s_at]

Description T27C4.4B /REP_DB=WormBase Gene ID /WP=CE21212 /GEN=egr-1 /TR=O61907 /GB=AAD34654.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 60      6grp_total > 17      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 550.1
(3)
P 		329.6
(-1)
P 		219.1
(-3)
P 		306.4
(-1.4)
P 		331
B 487
(3)
P 		338
(-0.4)
P 		225.2
(-3)
P 		355.8
(-0)
P 		262
C 421.9
(3)
P 		298.6
(-1.4)
P 		252.2
(-3)
P 		272.7
(-2.3)
P 		170
avr 486.3
(3) 		322.1
(-0.9) 		232.2
(-3) 		311.6
(-1.1) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 704
(3)
P 		360.3
(-1.3)
P 		298
(-2.1)
P 		229.1
(-3)
P 		316
(-1.9)
P 		376.6
(-1.1)
P 		475
B 618.9
(3)
P 		443.2
(-0.1)
P 		436.8
(-0.2)
P 		281.1
(-3)
P 		288.4
(-2.9)
P 		385
(-1.2)
P 		338
C 622.6
(3)
P 		423.3
(-0.1)
P 		326.2
(-1.6)
P 		240.1
(-3)
P 		275
(-2.5)
P 		347.3
(-1.3)
P 		383
avr 648.5
(3) 		408.9
(-0.6) 		353.7
(-1.4) 		250.1
(-3) 		293.1
(-2.4) 		369.6
(-1.2) 		398
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 200.3
(3)
P 		71.5
(-2)
P 		57.3
(-2.5)
P 		44.8
(-3)
P 		156
B 155.3
(3)
P 		83.5
(-1.2)
P 		52.2
(-3)
P 		75.8
(-1.6)
P 		103
C 139.7
(3)
P 		85.9
(-0.4)
P 		87.9
(-0.3)
P 		46
(-3)
P 		94
avr 165.1
(3) 		80.3
(-1.6) 		65.8
(-2.4) 		55.5
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 129.8
(3)
P 		128.2
(2.9)
P 		64.9
(-2.4)
P 		58.1
(-3)
P 		95.4
(0.1)
P 		91.7
(-0.2)
P 		72
B 215.3
(3)
P 		147.5
(0.1)
P 		106.1
(-1.7)
P 		74.5
(-3)
P 		117.2
(-1.2)
P 		143.6
(-0.1)
P 		141
C 230.8
(3)
P 		129.2
(-0.3)
P 		83
(-1.9)
P 		48.3
(-3)
P 		89
(-1.7)
P 		116.3
(-0.8)
P 		183
avr 192
(3) 		135
(0.4) 		84.7
(-1.9) 		60.3
(-3) 		100.5
(-1.2) 		117.2
(-0.4) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188149_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15576
Sequence Type Exemplar sequence
Representative Public ID T27C4.4B NCBI
Target Description T27C4.4B /REP_DB=WormBase Gene ID /WP=CE21212 /GEN=egr-1 /TR=O61907 /GB=AAD34654.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071631(11), NM_071630(11), NM_182324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071631 NCBI Caenorhabditis elegans EGl-27 Related family member (egr-1) (egr-1) mRNA, complete cds. 11/11 None
NM_071630 NCBI Caenorhabditis elegans EGl-27 Related family member (egr-1) (egr-1) mRNA, complete cds. 11/11 A 
NM_182324 NCBI Caenorhabditis elegans EGl-27 Related family member (egr-1) (egr-1) mRNA, complete cds. 11/11 None
SNAP00000000360 ENSEMBL cdna:SNAP chromosome:CEL140:V:3704827:3712318:1 11/11 None
GENEFINDER00000000368 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3704827:3712318:1 11/11 None
T27C4.4d ENSEMBL cdna:known chromosome:CEL140:V:3704827:3709939:1 gene:T27C4.4 11/11 None
T27C4.4b ENSEMBL cdna:known chromosome:CEL140:V:3704827:3712586:1 gene:T27C4.4 11/11 None
T27C4.4a ENSEMBL cdna:known chromosome:CEL140:V:3704827:3712332:1 gene:T27C4.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182323 6/11 Cross Hyb Matching Probes None
T27C4.4c 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178788 4 3 NM_071630 188149_s_at (11), 188166_s_at (11)
NM_071631 188149_s_at (11)
NM_182324 188149_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3704826-3710375(+) 92.15 100.0
Public Domain and Genome References
Ensembl T27C4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD34654 Egl-27 related protein 1, isoform b [Caenorhabditis elegans] ref|NP_504032.1| EGl-27 Related family member (egr-1) [Caenorhabditis elegans] 0.0
blast AAO25984 Egl-27 related protein 1, isoform d [Caenorhabditis elegans] ref|NP_872124.1| EGl-27 Related family member (egr-1) [Caenorhabditis elegans] 0.0
blast AAD34653 Egl-27 related protein 1, isoform a [Caenorhabditis elegans] ref|NP_504031.1| EGl-27 Related family member (egr-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 5.2E-6
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 1.7E-9
Pfam IPR000949 EMBL-EBI ELM2 domain 3.8E-26
Pfam IPR001025 EMBL-EBI Bromo adjacent region 2.8E-22
Sequence
Target Sequence 
>C. ELEGANS:188149_S_AT
gtgaacacgttgactccacaacaacagcagcagcagcgcgctgccgccgccaacatgctc
atgacgctgaacagtggtgataagcagaatttgttgaatgtggcaaaggaggcgctggca
cgtggccaaatcacccaggagcaatttctacagctacagaagaatttcgctcagaaaatc
caggcacaaattcaacaacagattcagcagcagcaacagcggcaggcgcaaacgacgccg
caagtggtcgcaacgcccaggaaaaagacgactccagccacaaaaccggccatcgtcttt
tacacgacaatctgccgacgagcggttcgccggattttgccgaaaagcgcgttcaacctg
agaaaattgtcccgtcggccgaacctcgccatcgatgatgagaagatcctcagagctatg
attatgctcgacaagaagcaccttctgcagtcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAACACGTTGACTCCACAACAAC 387 481 2008 Antisense
AACATGCTCATGACGCTGAACAGTG 407 137 2059 Antisense
TGTGGCAAAGGAGGCGCTGGCACGT 342 555 2106 Antisense
ATCACCCAGGAGCAATTTCTACAGC 245 27 2137 Antisense
CAACAGCGGCAGGCGCAAACGACGC 622 189 2221 Antisense
AAACGACGCCGCAAGTGGTCGCAAC 704 123 2237 Antisense
GGCCATCGTCTTTTACACGACAATC 374 543 2295 Antisense
GACAATCTGCCGACGAGCGGTTCGC 263 365 2313 Antisense
TTTGCCGAAAAGCGCGTTCAACCTG 515 651 2343 Antisense
CCGAACCTCGCCATCGATGATGAGA 566 263 2386 Antisense
ACAAGAAGCACCTTCTGCAGTCGGC 154 113 2438 Antisense
Sequence Source Affymetrix Proprietary Database