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[188148_at]

Description F35A5.3_rc /REP_DB=WormBase Gene ID /WP=CE04487 /TR=Q20002 /GB=AAB52643.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 27      4grp_total > 32      6grp_cgc > 15      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.4
(-1.1)
A 		1.7
(-3)
A 		4.4
(-0.1)
A 		7.2
(3)
A 		6
B 2
(-3)
A 		2.3
(-2.7)
A 		7.3
(3)
A 		2.8
(-2.1)
A 		5
C 2.2
(-3)
A 		4.4
(-0.2)
A 		6.9
(3)
A 		6
(1.9)
A 		5
avr 2.5
(-3) 		2.8
(-2.5) 		6.2
(3) 		5.3
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 34.3
(3)
A 		6.3
(-2.1)
A 		4.1
(-2.5)
A 		1.3
(-3)
A 		1.6
(-2.9)
A 		1.2
(-3)
A 		33
B 19
(1.9)
A 		22.8
(3)
A 		1.6
(-3)
A 		3.4
(-2.5)
A 		2.6
(-2.7)
A 		19
(1.9)
A 		21
C 2.8
(-1.4)
A 		2.2
(-1.9)
A 		1.7
(-2.4)
A 		7.6
(3)
A 		1.4
(-2.6)
A 		1
(-3)
A 		7
avr 18.7
(3) 		10.4
(0) 		2.5
(-2.8) 		4.1
(-2.2) 		1.9
(-3) 		7.1
(-1.1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(3)
A 		0.4
(-3)
A 		1.1
(2.3)
A 		1
(1.5)
A 		1
B 0.6
(-3)
A 		0.6
(-3)
A 		1.7
(3)
A 		0.6
(-3)
A 		1
C 0.7
(-3)
A 		1.3
(-0.9)
A 		2.4
(3)
A 		1
(-1.9)
A 		2
avr 0.8
(-3) 		0.8
(-3) 		1.7
(3) 		0.9
(-2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6.3
(3)
A 		2.2
(-1.1)
A 		0.9
(-2.4)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		6
B 6.6
(2.2)
A 		7.6
(3)
A 		0.4
(-3)
A 		0.9
(-2.6)
A 		1.1
(-2.4)
A 		7.1
(2.6)
A 		7
C 1
(0.5)
A 		0.7
(-1)
A 		0.4
(-2.5)
A 		1.5
(3)
A 		0.5
(-2)
A 		0.3
(-3)
A 		1
avr 4.6
(3) 		3.5
(1.4) 		0.6
(-3) 		0.9
(-2.6) 		0.7
(-2.9) 		2.6
(0) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28169
Sequence Type Exemplar sequence
Representative Public ID F35A5.3 NCBI
Target Description F35A5.3_rc /REP_DB=WormBase Gene ID /WP=CE04487 /TR=Q20002 /GB=AAB52643.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F35A5.3
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F35A5.3 F35A5.3_rc /REP_DB=WormBase Gene ID /WP=CE04487 /TR=Q20002 /GB=AAB52643.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076258 11/11 Negative Strand Matching Probes A 
SNAP00000032203 11/11 Negative Strand Matching Probes None
GENEFINDER00000032208 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3798207-3799627(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35A5.3
Sequence
Target Sequence 
>C. ELEGANS:188148_AT
agcgcaatcacaggctggctgagcttgttggcaacatgggttctgctgaactggagcaca
atcgcaagctggctgttgagcttgttgctgacggatctcgatttggatgcaggtcacaca
tgatgggttttgttggcagtcacaagctggttgttgagcaactggagcacaatcacaggc
tggttgttgttgtggctggcagtcacaggctggttgctgttgaactggagcgcaatcgca
ggatggttgctgttgctggcaggcgcatggatcttgttgaactggagcacagttacaagc
cggctgctgctgttgtggctggcaagcacatggatcttgctgaactggagcacagttgca
cgcaggctgctgctgctgtggctggcaagcacatgggtcttgagctggagcttgttggac
ctgagtgtactgaacctggacattgatggtggattgttggcagcacgatggttgctgctg
aactggggcgcatgagcaagcctgacgcttttctcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGCAATCACAGGCTGGCTGAGCT 124 83 562 Antisense
AGCTTGTTGCTGACGGATCTCGATT 282 79 640 Antisense
GGCAGTCACAGGCTGGTTGCTGTTG 245 537 759 Antisense
GCAGGATGGTTGCTGTTGCTGGCAG 435 309 799 Antisense
GGCAGGCGCATGGATCTTGTTGAAC 284 537 819 Antisense
GGAGCACAGTTACAAGCCGGCTGCT 653 517 845 Antisense
ACTGGAGCACAGTTGCACGCAGGCT 333 97 905 Antisense
GCACATGGGTCTTGAGCTGGAGCTT 553 315 950 Antisense
GGACCTGAGTGTACTGAACCTGGAC 268 523 978 Antisense
CGATGGTTGCTGCTGAACTGGGGCG 55 249 1027 Antisense
TGAGCAAGCCTGACGCTTTTCTCTA 408 569 1054 Antisense
Sequence Source Affymetrix Proprietary Database