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[188147_s_at]

Description F32A11.2 /REP_DB=WormBase Gene ID /WP=CE17738 /GEN=hpr-17 /TR=O62196 /GB=CAB04224.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 0      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 50.4
(-2.4)
A 		43.3
(-3)
A 		83.3
(0.3)
A 		116.5
(3)
A 		73
B 106
(2.9)
A 		14.5
(-3)
A 		107.8
(3)
P 		105.2
(2.8)
A 		93
C 56
(-3)
A 		80.6
(-0.7)
A 		120.6
(3)
P 		115.1
(2.5)
A 		65
avr 70.8
(-0.8) 		46.1
(-3) 		103.9
(2.2) 		112.3
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 79.3
(-2.9)
M 		78.2
(-2.9)
A 		74.2
(-3)
A 		155.3
(-1.4)
P 		321.2
(1.7)
P 		387.8
(3)
P 		314
B 63.8
(-3)
A 		62.1
(-3)
P 		70.6
(-2.8)
P 		186
(-0.6)
P 		360.1
(2.8)
P 		372.4
(3)
P 		310
C 54.6
(-3)
A 		71.1
(-2.8)
P 		80.2
(-2.7)
A 		142.2
(-1.9)
P 		263.4
(-0.3)
P 		522.1
(3)
P 		468
avr 65.9
(-3) 		70.5
(-2.9) 		75
(-2.8) 		161.2
(-1.4) 		314.9
(1.1) 		427.4
(3) 		362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 18.4
(1.4)
A 		9.4
(-3)
A 		21.8
(3)
A 		17.1
(0.7)
A 		12
B 33.8
(3)
A 		3.6
(-3)
A 		25
(1.3)
P 		22.4
(0.7)
A 		30
C 18.5
(-3)
A 		23.2
(-1.8)
A 		42
(3)
P 		19.4
(-2.8)
A 		24
avr 23.6
(0.9) 		12.1
(-3) 		29.6
(3) 		19.6
(-0.4) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 14.6
(-3)
M 		27.8
(-2)
A 		16.2
(-2.9)
A 		39.4
(-1.2)
P 		96.9
(3)
P 		94.4
(2.8)
P 		82
B 22.2
(-2.8)
A 		20.7
(-2.8)
P 		17.1
(-3)
P 		49.3
(-1.5)
P 		146.3
(3)
P 		138.9
(2.7)
P 		129
C 20.2
(-3)
A 		21.7
(-2.9)
P 		20.4
(-3)
A 		28.6
(-2.7)
P 		85.2
(-0.5)
P 		174.8
(3)
P 		155
avr 19
(-2.9) 		23.4
(-2.7) 		17.9
(-3) 		39.1
(-1.9) 		109.5
(1.7) 		136
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188147_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3817
Sequence Type Exemplar sequence
Representative Public ID F32A11.2 NCBI
Target Description F32A11.2 /REP_DB=WormBase Gene ID /WP=CE17738 /GEN=hpr-17 /TR=O62196 /GB=CAB04224.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064392 NCBI Caenorhabditis elegans Homolog of S.Pombe Rad family member (hpr-17) (hpr-17) mRNA, complete cds. 11/11 None
SNAP00000006596 ENSEMBL cdna:SNAP chromosome:CEL140:II:13153444:13156930:-1 11/11 None
GENEFINDER00000006603 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13153444:13156930:-1 11/11 None
F32A11.2 ENSEMBL cdna:known chromosome:CEL140:II:13153357:13156943:-1 gene:F32A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13153440-13156927(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol hpr-17
Ensembl F32A11.2
Entrez Gene 174958 Entrez gene
SwissProt O62196 EMBL-EBI
WormBase CE17738 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247081_AT cell cycle checkpoint protein-related at
CANINE:1584600_AT similar to RAD17 homolog isoform 2 cfa
CANINE_2:CFA.12356.1.A1_AT similar to RAD17 homolog isoform 2 cfa
CANINE_2:CFA.18252.1.S1_S_AT similar to RAD17 homolog isoform 2 cfa
CANINE_2:CFA.20948.1.S1_S_AT similar to RAD17 homolog isoform 2 cfa
CANINE_2:CFAAFFX.12505.1.S1_AT similar to RAD17 homolog isoform 2 cfa
DROSOPHILA_2:1626520_AT dm
DROSGENOME1:144096_AT dm
CHICKEN:GGA.17469.1.S1_S_AT RAD17 homolog (S. pombe) gga
HG-U133_PLUS_2:207405_S_AT RAD17 homolog (S. pombe) hs
HG-U133A:207405_S_AT RAD17 homolog (S. pombe) hs
HG-FOCUS:207405_S_AT RAD17 homolog (S. pombe) hs
HG-U133A_2:207405_S_AT RAD17 homolog (S. pombe) hs
HG-U133_PLUS_2:211228_S_AT RAD17 homolog (S. pombe) hs
HG-U133A:211228_S_AT RAD17 homolog (S. pombe) hs
HG-U133A_2:211228_S_AT RAD17 homolog (S. pombe) hs
HG-U133_PLUS_2:210826_X_AT RAD17 homolog (S. pombe) hs
HG-U133A:210826_X_AT RAD17 homolog (S. pombe) hs
HG-U133A_2:210826_X_AT RAD17 homolog (S. pombe) hs
HU35KSUBB:RC_W88751_AT RAD17 homolog (S. pombe) hs
U133_X3P:G4506382_3P_A_AT RAD17 homolog (S. pombe) hs
U133_X3P:G3641288_3P_A_AT RAD17 homolog (S. pombe) hs
HG-U95AV2:32118_AT RAD17 homolog (S. pombe) hs
MG-U74AV2:103840_AT RAD17 homolog (S. pombe) mm
MOE430A:1448762_AT RAD17 homolog (S. pombe) mm
MOUSE430A_2:1448762_AT RAD17 homolog (S. pombe) mm
MOUSE430_2:1448762_AT RAD17 homolog (S. pombe) mm
MU19KSUBB:TC31913_AT RAD17 homolog (S. pombe) (Rad17), mRNA mm
RAE230B:1385090_AT RAD17 homolog (S. pombe) (predicted) rn
RAT230_2:1385090_AT RAD17 homolog (S. pombe) (predicted) rn
RG-U34B:RC_AA946453_AT RAD17 homolog (S. pombe) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
7049 cell cycle inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04224 Hypothetical protein F32A11.2 [Caenorhabditis elegans] ref|NP_496793.1| Homolog of S.Pombe Rad family member (hpr-17) [Caenorhabditis elegans] gb|AAC95522.1| Rad17-like protein [Caenorhabditis elegans] 0.0
blast CAE59436 Hypothetical protein CBG02809 [Caenorhabditis briggsae] 1.0E-149
blast CAE59436 Hypothetical protein CBG02809 [Caenorhabditis briggsae] 1.0E-145
blast XP_787106 PREDICTED: similar to RAD17 homolog, partial [Strongylocentrotus purpuratus] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR004582 EMBL-EBI Checkpoint protein Rad24 1.0E-126
Pfam IPR004582 EMBL-EBI Checkpoint protein Rad24 1.2E-28
Pfam IPR004582 EMBL-EBI Checkpoint protein Rad24 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188147_S_AT
gcccatcttctgctcgaatatatccaaatatcgctacgtcgcggagactttttcgatgtg
tgactttttaaccggagactggacgacccgaaaatctctgccagaagattacgtggcaca
gatggctacacgttcggtgatgtggaataactacaaagaacctcgcccgggaacattatt
cgcagtcggacgtccgttaagaagctcactggaaaaacacacggctcgaacgaaattgga
attgcaaagacttccgatgattggtgccaaggattatgctgctctaacatgtccgtatat
aacaatcatcaaggatattatcgatccgcagagaatcgagtatttcctctcgagacccat
ggatatcaactggcaatggggaaatgataaaatcgaggagcatttagagaaacagtatgc
cctagactacaaaggacgtaaaaaacaccgtcttccccttcataaggcaccgaagccttc
cggaaagatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCATCTTCTGCTCGAATATATCC 464 287 987 Antisense
TATATCCAAATATCGCTACGTCGCG 344 661 1005 Antisense
GCTACGTCGCGGAGACTTTTTCGAT 502 301 1019 Antisense
GACTGGACGACCCGAAAATCTCTGC 692 375 1063 Antisense
GTGGCACAGATGGCTACACGTTCGG 1 491 1099 Antisense
CTCGCCCGGGAACATTATTCGCAGT 653 231 1148 Antisense
CGGACGTCCGTTAAGAAGCTCACTG 457 73 1173 Antisense
AAGACTTCCGATGATTGGTGCCAAG 532 153 1233 Antisense
TATTTCCTCTCGAGACCCATGGATA 561 661 1327 Antisense
TCTTCCCCTTCATAAGGCACCGAAG 264 607 1437 Antisense
GGCACCGAAGCCTTCCGGAAAGATT 425 533 1452 Antisense
Sequence Source Affymetrix Proprietary Database