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[188146_s_at]

Description K10B2.3 /REP_DB=WormBase Gene ID /WP=CE02010 /TR=Q09992 /GB=AAA68260.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=lectin
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 06      6grp_total > 88      4grp_total > 09      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 718
1 2 3 4 range
A 84.2
(-2.9)
P 		99.5
(-2.8)
P 		76.5
(-3)
A 		738.4
(3)
P 		662
B 65.9
(-3)
P 		137
(-2.3)
P 		116
(-2.5)
P 		640.3
(3)
P 		574
C 105.6
(-2.8)
P 		87.3
(-3)
P 		142.6
(-2.5)
P 		783.4
(3)
P 		696
avr 85.2
(-3) 		107.9
(-2.8) 		111.7
(-2.7) 		720.7
(3) 		636

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5190
1 2 3 4 5 6 range
A 107.3
(-3)
P 		79.2
(-3)
P 		202
(-2.8)
P 		376.9
(-2.6)
P 		3210.5
(1.2)
P 		4505.9
(3)
P 		4427
B 165.7
(-2.9)
P 		99
(-3)
A 		176.1
(-2.9)
P 		471.5
(-2.5)
P 		3011.3
(0.6)
P 		4996.9
(3)
P 		4898
C 88.1
(-3)
P 		132.9
(-2.9)
P 		128.1
(-3)
P 		705.5
(-2.3)
P 		2687.4
(0)
P 		5268.7
(3)
P 		5181
avr 120.4
(-3) 		103.7
(-3) 		168.7
(-2.9) 		518
(-2.5) 		2969.7
(0.6) 		4923.8
(3) 		4820
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 30.7
(-2.3)
P 		21.6
(-2.9)
P 		20
(-3)
A 		108.1
(3)
P 		88
B 21
(-3)
P 		33.8
(-2.3)
P 		26.9
(-2.7)
P 		136.4
(3)
P 		115
C 34.9
(-2.5)
P 		25.1
(-3)
P 		49.7
(-1.6)
P 		132.1
(3)
P 		107
avr 28.9
(-2.9) 		26.8
(-3) 		32.2
(-2.7) 		125.5
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1844
1 2 3 4 5 6 range
A 19.8
(-3)
P 		28.2
(-3)
P 		44
(-2.9)
P 		95.6
(-2.6)
P 		968.8
(2.3)
P 		1097
(3)
P 		1077
B 57.7
(-2.9)
P 		33
(-3)
A 		42.8
(-3)
P 		124.9
(-2.7)
P 		1223.5
(0.9)
P 		1863.3
(3)
P 		1830
C 32.7
(-3)
P 		40.5
(-3)
P 		32.6
(-3)
P 		141.9
(-2.6)
P 		869.6
(-0.1)
P 		1763.7
(3)
P 		1731
avr 36.7
(-3) 		33.9
(-3) 		39.8
(-3) 		120.8
(-2.7) 		1020.6
(0.8) 		1574.7
(3) 		1541
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188146_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4624
Sequence Type Exemplar sequence
Representative Public ID K10B2.3 NCBI
Target Description K10B2.3 /REP_DB=WormBase Gene ID /WP=CE02010 /TR=Q09992 /GB=AAA68260.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182210(11), NM_062882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182210 NCBI Caenorhabditis elegans K10B2.3b (lectin) mRNA, complete cds. 11/11 A 
NM_062882 NCBI Caenorhabditis elegans K10B2.3a (lectin) mRNA, complete cds. 11/11 A 
SNAP00000015731 ENSEMBL cdna:SNAP chromosome:CEL140:II:6365329:6366524:1 11/11 None
GENEFINDER00000015739 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6365724:6366524:1 11/11 None
K10B2.3b ENSEMBL cdna:known chromosome:CEL140:II:6365685:6366786:1 gene:K10B2.3 11/11 A 
K10B2.3a ENSEMBL cdna:known chromosome:CEL140:II:6365724:6366629:1 gene:K10B2.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6365325-6366521(+) 100.0 100.0
Public Domain and Genome References
Ensembl K10B2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38622 Hypothetical protein K10B2.3b [Caenorhabditis elegans] ref|NP_872010.1| K10B2.3b [Caenorhabditis elegans] 1.0E-144
blast T16605 hypothetical protein K10B2.3 - Caenorhabditis elegans 1.0E-143
blast AAO38621 Hypothetical protein K10B2.3a [Caenorhabditis elegans] ref|NP_495283.2| K10B2.3a [Caenorhabditis elegans] 1.0E-134
blast T16605 hypothetical protein K10B2.3 - Caenorhabditis elegans 1.0E-134
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000015731 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:188146_S_AT
gttgatcaagccgtatagtccactcgtcaatggatggtcacaacttgccaactgtgctgc
cagttataagtccccagcctctttggaaactgcttcatacacttatttctacccatgtac
atatttattctattcgatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGATCAAGCCGTATAGTCCACTC 520 437 567 Antisense
GCCGTATAGTCCACTCGTCAATGGA 49 283 576 Antisense
GTCAATGGATGGTCACAACTTGCCA 658 463 592 Antisense
ATGGTCACAACTTGCCAACTGTGCT 295 51 600 Antisense
TGCCAACTGTGCTGCCAGTTATAAG 344 587 612 Antisense
TGCTGCCAGTTATAAGTCCCCAGCC 8 583 621 Antisense
CCCAGCCTCTTTGGAAACTGCTTCA 388 257 639 Antisense
GCCTCTTTGGAAACTGCTTCATACA 90 283 643 Antisense
GCTTCATACACTTATTTCTACCCAT 508 305 658 Antisense
CACTTATTTCTACCCATGTACATAT 441 197 666 Antisense
TGTACATATTTATTCTATTCGATCT 632 559 682 Antisense
Sequence Source Affymetrix Proprietary Database