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[188145_at]

Description K10B2.3 /REP_DB=WormBase Gene ID /WP=CE02010 /TR=Q09992 /GB=AAA68260.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=lectin
Cluster 6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 39.2
(-3)
A 		67.5
(-2)
A 		77.9
(-1.7)
A 		215.1
(3)
P 		176
B 35.5
(-3)
A 		96.5
(-1.5)
A 		74
(-2.1)
A 		282.2
(3)
P 		247
C 65.8
(-3)
A 		79
(-2.7)
A 		70.8
(-2.9)
A 		296.5
(3)
P 		231
avr 46.8
(-3) 		81
(-2.1) 		74.2
(-2.2) 		264.6
(3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1953
1 2 3 4 5 6 range
A 42.4
(-3)
A 		27.4
(-3)
A 		93.8
(-2.8)
M 		245.1
(-2.3)
P 		968.8
(-0.1)
P 		1980.6
(3)
P 		1953
B 67.2
(-3)
A 		62.3
(-3)
A 		89.7
(-2.9)
P 		211.9
(-2.5)
P 		1059.3
(0.6)
P 		1704.7
(3)
P 		1642
C 94.7
(-2.8)
A 		52.4
(-3)
A 		88.2
(-2.9)
A 		274.4
(-2.2)
P 		1097.4
(0.8)
P 		1700.6
(3)
P 		1648
avr 68.1
(-2.9) 		47.4
(-3) 		90.6
(-2.9) 		243.8
(-2.3) 		1041.8
(0.4) 		1795.3
(3) 		1748
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 14.3
(-3)
A 		14.7
(-2.9)
A 		20.4
(-0.9)
A 		31.5
(3)
P 		17
B 11.3
(-3)
A 		23.8
(-1.5)
A 		17.2
(-2.3)
A 		60.1
(3)
P 		49
C 21.8
(-3)
A 		22.7
(-2.8)
A 		24.7
(-2.4)
A 		50
(3)
P 		28
avr 15.8
(-3) 		20.4
(-2.1) 		20.8
(-2) 		47.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 7.8
(-3)
A 		9.8
(-3)
A 		20.4
(-2.8)
M 		62.2
(-2.3)
P 		292.3
(0.6)
P 		482.2
(3)
P 		474
B 23.4
(-3)
A 		20.7
(-3)
A 		21.8
(-3)
P 		56.1
(-2.7)
P 		430.4
(1)
P 		635.7
(3)
P 		615
C 35.1
(-2.8)
A 		16
(-3)
A 		22.4
(-2.9)
A 		55.2
(-2.6)
P 		355.1
(0.7)
P 		569.3
(3)
P 		553
avr 22.1
(-2.9) 		15.5
(-3) 		21.5
(-2.9) 		57.8
(-2.5) 		359.3
(0.8) 		562.4
(3) 		547
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4624
Sequence Type Exemplar sequence
Representative Public ID K10B2.3 NCBI
Target Description K10B2.3 /REP_DB=WormBase Gene ID /WP=CE02010 /TR=Q09992 /GB=AAA68260.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182210(11), NM_062882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182210 NCBI Caenorhabditis elegans K10B2.3b (lectin) mRNA, complete cds. 11/11 A 
NM_062882 NCBI Caenorhabditis elegans K10B2.3a (lectin) mRNA, complete cds. 11/11 A 
SNAP00000015731 ENSEMBL cdna:SNAP chromosome:CEL140:II:6365329:6366524:1 11/11 None
GENEFINDER00000015739 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6365724:6366524:1 11/11 None
K10B2.3b ENSEMBL cdna:known chromosome:CEL140:II:6365685:6366786:1 gene:K10B2.3 11/11 A 
K10B2.3a ENSEMBL cdna:known chromosome:CEL140:II:6365724:6366629:1 gene:K10B2.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6365325-6366521(+) 100.0 100.0
Public Domain and Genome References
Ensembl K10B2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38622 Hypothetical protein K10B2.3b [Caenorhabditis elegans] ref|NP_872010.1| K10B2.3b [Caenorhabditis elegans] 1.0E-144
blast T16605 hypothetical protein K10B2.3 - Caenorhabditis elegans 1.0E-143
blast AAO38621 Hypothetical protein K10B2.3a [Caenorhabditis elegans] ref|NP_495283.2| K10B2.3a [Caenorhabditis elegans] 1.0E-134
blast T16605 hypothetical protein K10B2.3 - Caenorhabditis elegans 1.0E-134
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000015731 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:188145_AT
tactgaagagcagccccatcagcgacaaaaactctacaattgggactacaaggacctcgg
aacaattgcattcgaagacattccattcccaactcttcagccgtcacaaactattgacca
atcggaaaattgcccggaaggttggatccgatattccgattcatgctactgggtggaaac
ggagcttcttggattcgccaaagccgaaagaaagtgttctgaaaagcaatcgacactgtt
tgtggccaattctatcgatgagtgggaggcaattcgtggtcattcaaaagactcgttttc
ttcgtggatcggtcttgttagattttcccactacgagagatccgagcaattgccacgttg
gcagaccgaaggagctgtcaatccgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGAAGAGCAGCCCCATCAGCGA 396 647 168 Antisense
ATTCGAAGACATTCCATTCCCAACT 293 9 237 Antisense
CTCTTCAGCCGTCACAAACTATTGA 651 229 260 Antisense
GGATCCGATATTCCGATTCATGCTA 508 513 311 Antisense
GTTTGTGGCCAATTCTATCGATGAG 365 451 405 Antisense
AGTGGGAGGCAATTCGTGGTCATTC 402 57 428 Antisense
GACTCGTTTTCTTCGTGGATCGGTC 162 375 457 Antisense
GATCGGTCTTGTTAGATTTTCCCAC 102 417 474 Antisense
TTTTCCCACTACGAGAGATCCGAGC 265 677 490 Antisense
AGATCCGAGCAATTGCCACGTTGGC 489 67 505 Antisense
GACCGAAGGAGCTGTCAATCCGTCT 144 383 531 Antisense
Sequence Source Affymetrix Proprietary Database