[Home] | [Total List]

[188141_at] Globin

Description F35B12.8 /REP_DB=WormBase Gene ID /WP=CE05807 /TR=Q20015 /GB=CAA98468.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Globin
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 44      4grp_high_8_8 > 05      6grp_highest_nonorm > 90      6grp_total > 20      4grp_total > 03      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 126
(-2.3)
P 		122.5
(-2.4)
P 		97.2
(-3)
A 		340.4
(3)
P 		243
B 147.4
(-1.1)
P 		98.5
(-2.7)
P 		89.5
(-3)
A 		273.5
(3)
P 		184
C 131.7
(-2)
P 		99.7
(-2.6)
A 		78.8
(-3)
P 		410.7
(3)
P 		332
avr 135
(-1.9) 		106.9
(-2.6) 		88.5
(-3) 		341.5
(3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 170.8
(0.9)
P 		150
(-0.4)
P 		205.4
(3)
P 		107.3
(-3)
P 		193.7
(2.3)
P 		164.5
(0.5)
P 		98
B 135.5
(-3)
P 		219.8
(3)
P 		216.2
(2.7)
P 		158.4
(-1.4)
P 		143.6
(-2.4)
P 		176.4
(-0.1)
P 		84
C 121.5
(-1.7)
P 		225
(3)
P 		103.9
(-2.5)
P 		220.7
(2.8)
P 		92.3
(-3)
P 		147.1
(-0.5)
P 		133
avr 142.6
(-3) 		198.3
(3) 		175.2
(0.5) 		162.1
(-0.9) 		143.2
(-2.9) 		162.7
(-0.8) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 45.9
(2)
P 		26.6
(-2.7)
P 		25.4
(-3)
A 		49.8
(3)
P 		24
B 47
(1.2)
P 		24.3
(-2.4)
P 		20.7
(-3)
A 		58.3
(3)
P 		38
C 43.6
(-0.7)
P 		28.7
(-2.8)
A 		27.4
(-3)
P 		69.3
(3)
P 		42
avr 45.5
(0.6) 		26.5
(-2.7) 		24.5
(-3) 		59.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 31.5
(-2.2)
P 		53.3
(2)
P 		44.7
(0.4)
P 		27.2
(-3)
P 		58.5
(3)
P 		40.1
(-0.5)
P 		31
B 47.2
(-2)
P 		73.2
(3)
P 		52.5
(-1)
P 		42
(-3)
P 		58.3
(0.1)
P 		65.8
(1.6)
P 		31
C 45
(-0.4)
P 		68.7
(3)
P 		26.4
(-3)
P 		44.4
(-0.4)
P 		29.9
(-2.5)
P 		49.3
(0.2)
P 		42
avr 41.2
(-2.3) 		65.1
(3) 		41.2
(-2.3) 		37.9
(-3) 		48.9
(-0.6) 		51.7
(0) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14358
Sequence Type Exemplar sequence
Representative Public ID F35B12.8 NCBI
Target Description F35B12.8 /REP_DB=WormBase Gene ID /WP=CE05807 /TR=Q20015 /GB=CAA98468.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Globin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073546(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073546 NCBI Caenorhabditis elegans F35B12.8 (Globin) mRNA, complete cds. 11/11 None
SNAP00000002156 ENSEMBL cdna:SNAP chromosome:CEL140:V:11620194:11620855:-1 10/11 None
GENEFINDER00000002161 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11619521:11620855:-1 11/11 None
F35B12.8 ENSEMBL cdna:known chromosome:CEL140:V:11619401:11620855:-1 gene:F35B12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11619776-11620855(-) 100.0 100.0
Public Domain and Genome References
Gene Title Globin
Ensembl F35B12.8
Entrez Gene 185260 Entrez gene
SwissProt Q20015 EMBL-EBI
WormBase CE31930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98468 Hypothetical protein F35B12.8 [Caenorhabditis elegans] ref|NP_505947.2| F35B12.8 [Caenorhabditis elegans] 1.0E-120
blast CAE75325 Hypothetical protein CBG23302 [Caenorhabditis briggsae] 1.0E-118
blast CAA98468 Hypothetical protein F35B12.8 [Caenorhabditis elegans] ref|NP_505947.2| F35B12.8 [Caenorhabditis elegans] 1.0E-86
blast CAE75325 Hypothetical protein CBG23302 [Caenorhabditis briggsae] 3.0E-86
Sequence
Target Sequence 
>C. ELEGANS:188141_AT
atgcactcagccagaattcaacagtttgtcagacgtcttcaacgcccatccattcaggga
gaccatgtttatatttcaagcaaatacacaagtcgtttgtttatttgtgagcaagaagaa
gttaacaaaatgattgaatcatatcaaaaaattgacgacaaatatgcattgtttgaacaa
atgttccttacaatatttttggagcaggaagtcgaaatggcttacagttttgggcttgag
aatttgaatgagcaacaacttaaggttgaacagaaattcagaactcatgtgggaaaattt
caacgattcattacaggaatcattgacatgctttcgaaaggtgttgaaagttcagatcag
attgttgaaattcttagaatcgttggtcgtcaacatggaaacgtgcggacgatgagtttc
actgccgagaagtggctcattttcaagaatgtgctccttgacctcctgtgcaaggatgca
aatgagaaagtgggtgcaacgtggaataagctcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACTCAGCCAGAATTCAACAGT 622 43 13 Antisense
AACAGTTTGTCAGACGTCTTCAACG 505 135 32 Antisense
TCAACGCCCATCCATTCAGGGAGAC 247 631 51 Antisense
GGGAGACCATGTTTATATTTCAAGC 576 495 69 Antisense
AATGGCTTACAGTTTTGGGCTTGAG 406 161 228 Antisense
AAATTCTTAGAATCGTTGGTCGTCA 301 115 380 Antisense
ACGTGCGGACGATGAGTTTCACTGC 5 95 413 Antisense
ACTGCCGAGAAGTGGCTCATTTTCA 182 97 433 Antisense
TCAAGAATGTGCTCCTTGACCTCCT 667 631 455 Antisense
CTTGACCTCCTGTGCAAGGATGCAA 556 217 469 Antisense
GGGTGCAACGTGGAATAAGCTCATC 448 497 504 Antisense
Sequence Source Affymetrix Proprietary Database