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[188140_at] 7TM chemoreceptor, sra family

Description AH6.11 /REP_DB=WormBase Gene ID /WP=CE01452 /GEN=sra-7 /TR=SW:Q09209 /GB=CAA88081.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 21      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 43.1
(-0.1)
A 		34
(-0.7)
A 		3
(-3)
A 		85.2
(3)
A 		82
B 17.1
(3)
A 		5.4
(-2.9)
A 		5.3
(-3)
A 		15.2
(2)
A 		12
C 23.4
(0.8)
A 		14.6
(-0.8)
A 		2.3
(-3)
A 		35.7
(3)
A 		33
avr 27.9
(0.5) 		18
(-0.9) 		3.5
(-3) 		45.4
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 57.7
(3)
A 		33.5
(-0.5)
A 		16.6
(-3)
A 		24.7
(-1.8)
A 		51.4
(2.1)
A 		25.7
(-1.7)
A 		41
B 40.3
(3)
A 		31.4
(0.7)
A 		34.6
(1.5)
A 		23.5
(-1.3)
A 		28.8
(0)
A 		17
(-3)
A 		23
C 2.9
(-2.8)
A 		26.3
(3)
A 		17.8
(0.9)
A 		3.4
(-2.6)
A 		22.2
(2)
A 		1.9
(-3)
A 		24
avr 33.6
(2.8) 		30.4
(1.8) 		23
(-0.5) 		17.2
(-2.3) 		34.1
(3) 		14.9
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.7
(3)
A 		7.4
(-0.3)
A 		0.8
(-3)
A 		12.5
(1.7)
A 		15
B 5.4
(3)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		3.2
(-0.1)
A 		4
C 7.8
(3)
A 		4.2
(-0.1)
A 		0.8
(-3)
A 		6
(1.5)
A 		7
avr 9.6
(3) 		4.3
(-0.7) 		0.9
(-3) 		7.2
(1.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.6
(0.5)
A 		11.9
(1.2)
A 		3.6
(-3)
A 		6.3
(-1.6)
A 		15.5
(3)
A 		6.3
(-1.6)
A 		12
B 14
(3)
A 		10.5
(0.3)
A 		8.4
(-1.3)
A 		6.2
(-3)
A 		11.7
(1.2)
A 		6.4
(-2.8)
A 		8
C 1.1
(-2.6)
A 		8
(3)
A 		4.5
(0.2)
A 		0.7
(-2.9)
A 		7.2
(2.4)
A 		0.6
(-3)
A 		7
avr 8.6
(0.5) 		10.1
(1.8) 		5.5
(-2.1) 		4.4
(-3) 		11.5
(3) 		4.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3120
Sequence Type Exemplar sequence
Representative Public ID AH6.11 NCBI
Target Description AH6.11 /REP_DB=WormBase Gene ID /WP=CE01452 /GEN=sra-7 /TR=SW:Q09209 /GB=CAA88081.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063649 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-7) (sra-7) mRNA, complete cds. 11/11 None
AH6.11 ENSEMBL cdna:known chromosome:CEL140:II:9544596:9546118:1 gene:AH6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9544592-9546115(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-7
Ensembl AH6.11
Entrez Gene 191778 Entrez gene
SwissProt Q09209 EMBL-EBI
WormBase CE01452 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88081 Hypothetical protein AH6.11 [Caenorhabditis elegans] ref|NP_496050.1| Serpentine Receptor, class A (alpha) family member (sra-7) [Caenorhabditis elegans] sp|Q09209|SRA7_CAEEL Serpentine receptor class alpha-7 (Protein sra-7) prf||2123261G chemosensory receptor 1.0E-169
blast CAA88086 Hypothetical protein AH6.7 [Caenorhabditis elegans] ref|NP_496048.1| Serpentine Receptor, class A (alpha) family member (sra-3) [Caenorhabditis elegans] sp|Q09205|SRA3_CAEEL Serpentine receptor class alpha-3 (Protein sra-3) 1.0E-110
blast 2123261C chemosensory receptor 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496050.1 5 20-42,142-164,188-207,237-259,274-296
AH6.11 5 20-42,142-164,188-207,237-259,274-296
Sequence
Target Sequence 
>C. ELEGANS:188140_AT
gaggttgtgcaactttcatcaaagattatgataagaagacaagcatgtttgttgggatag
caatatcaattgccattttgtttttgagcttgatcactggaaaaattataatttgggatg
acccacttcaaggatatcttctttcgtgtgtttcctatccaagtcaaagtgttgaaagat
caagactatttgcaagtatttatacatttatatcttcattcaatttggttttctcagttt
tgttaagaagatataacaaaaaactggaatattcaacaccctttgttgttggcccgagat
ttcggaaaagagaagtgattgactccacaagtacaatatgctttttgacatttgttcaat
tcatattcatgttcatttattcattcggaatattcacactgaaaactattcgaagcatgc
ttacttacagacagtactatttcattgttgtctggttctatacaattccattcattgctg
cgctgtttccaattctactagtttacaggattcgttcttcacatgttagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTTGTGCAACTTTCATCAAAGA 499 403 389 Antisense
TGCCATTTTGTTTTTGAGCTTGATC 222 585 459 Antisense
GGGATGACCCACTTCAAGGATATCT 63 497 503 Antisense
GGATATCTTCTTTCGTGTGTTTCCT 181 511 520 Antisense
TTCGTGTGTTTCCTATCCAAGTCAA 398 695 531 Antisense
ACTGGAATATTCAACACCCTTTGTT 252 97 651 Antisense
CCTTTGTTGTTGGCCCGAGATTTCG 180 267 668 Antisense
CGAAGCATGCTTACTTACAGACAGT 623 253 799 Antisense
CTATTTCATTGTTGTCTGGTTCTAT 143 225 825 Antisense
GCTGTTTCCAATTCTACTAGTTTAC 549 293 870 Antisense
AGGATTCGTTCTTCACATGTTAGCC 542 55 895 Antisense
Sequence Source Affymetrix Proprietary Database