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[188139_at]

Description C49H3.4_rc /REP_DB=WormBase Gene ID /WP=CE04230 /TR=Q9GYQ8 /GB=AAF99900.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 53      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 42.1
(-1.9)
A 		76.5
(-0.7)
A 		9.1
(-3)
A 		185.9
(3)
P 		177
B 64.8
(-1.1)
A 		54
(-2)
A 		40.1
(-3)
A 		119.7
(3)
M 		80
C 85.8
(0.1)
A 		53.3
(-1.9)
A 		34.3
(-3)
A 		134.1
(3)
P 		100
avr 64.2
(-1.2) 		61.3
(-1.3) 		27.8
(-3) 		146.6
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 83.3
(1.2)
A 		23.3
(-2)
A 		116.9
(3)
P 		5.4
(-3)
A 		87.2
(1.4)
A 		32.8
(-1.5)
A 		112
B 62.4
(2.3)
A 		56.7
(0.8)
A 		52.4
(-0.3)
A 		41.6
(-3)
A 		47.9
(-1.4)
A 		65.2
(3)
A 		24
C 2
(-3)
A 		70.1
(3)
A 		45.9
(0.9)
A 		61.6
(2.3)
A 		28.3
(-0.7)
A 		39.7
(0.3)
A 		68
avr 49.2
(-0.8) 		50
(-0.7) 		71.7
(3) 		36.2
(-3) 		54.5
(0.1) 		45.9
(-1.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 15.3
(0.1)
A 		16.6
(0.4)
A 		2.4
(-3)
A 		27.2
(3)
P 		25
B 20.7
(1.2)
A 		13.3
(-1.5)
A 		9.3
(-3)
A 		25.5
(3)
M 		16
C 28.4
(3)
A 		15.3
(-1.8)
A 		11.9
(-3)
A 		22.6
(0.9)
P 		17
avr 21.5
(1.7) 		15.1
(-0.5) 		7.9
(-3) 		25.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 15.3
(0.3)
A 		8.3
(-1.3)
A 		25.5
(2.8)
P 		1.4
(-3)
A 		26.3
(3)
A 		8
(-1.4)
A 		25
B 21.7
(1.8)
A 		18.9
(0.6)
A 		12.7
(-2.2)
A 		11
(-3)
A 		19.5
(0.8)
A 		24.3
(3)
A 		13
C 0.7
(-3)
A 		21.4
(3)
A 		11.7
(0.2)
A 		12.4
(0.4)
A 		9.2
(-0.5)
A 		13.3
(0.7)
A 		21
avr 12.6
(-0.4) 		16.2
(1.7) 		16.6
(2) 		8.3
(-3) 		18.3
(3) 		15.2
(1.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28142
Sequence Type Exemplar sequence
Representative Public ID C49H3.4 NCBI
Target Description C49H3.4_rc /REP_DB=WormBase Gene ID /WP=CE04230 /TR=Q9GYQ8 /GB=AAF99900.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C49H3.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C49H3.4 C49H3.4_rc /REP_DB=WormBase Gene ID /WP=CE04230 /TR=Q9GYQ8 /GB=AAF99900.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028679 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7915300-7916580(-) 91.61 100.0
Public Domain and Genome References
Ensembl C49H3.4
Sequence
Target Sequence 
>C. ELEGANS:188139_AT
gcaatcatcgacattggtccttcaattgtaatcattttatcgtgaaatgttattcctttt
ttttcaattacacttcgtccatcagtcatcattgcttccaatcgtatttgacgatctcga
gcttgttgtatagatagtgcaaaattaagaacatttttaaagtacttttggtcgacttcc
aaaattatgataatagacgtccaaaatgagaattttcgtcttattttacgctcacgggtc
tcgccacgcaggcatcgagctactgtaacttcatgtgttcgtggtgagaccatgcgtgta
agatatggcgaaaattcgcatttgtggacgtatctaaatttcaaaatttcaattaattga
aagttatattttttaaaaataacgaactttttacttatagtcttttctttttcctctctt
acagttctttcatcaaaatcacaaatttcttctgcaagttccggatgcaaatccactaga
tttttctcaaattcatcagttttgaaatcttcactatttccttcgaccccttcgataagt
tctggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATCATCGACATTGGTCCTTCAA 257 321 344 Antisense
TTTTCAATTACACTTCGTCCATCAG 168 675 404 Antisense
TCCATCAGTCATCATTGCTTCCAAT 413 591 421 Antisense
TTGACGATCTCGAGCTTGTTGTATA 345 705 451 Antisense
CCACGCAGGCATCGAGCTACTGTAA 118 275 587 Antisense
GCTACTGTAACTTCATGTGTTCGTG 172 303 602 Antisense
GTGTTCGTGGTGAGACCATGCGTGT 446 483 618 Antisense
AATTCGCATTTGTGGACGTATCTAA 636 175 656 Antisense
TCCTCTCTTACAGTTCTTTCATCAA 452 593 755 Antisense
AAATTTCTTCTGCAAGTTCCGGATG 557 113 786 Antisense
TCGACCCCTTCGATAAGTTCTGGAT 565 601 866 Antisense
Sequence Source Affymetrix Proprietary Database