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[188138_s_at]

Description M03A8.4 /REP_DB=WormBase Gene ID /WP=CE28346 /GEN=gei-15 /TR=Q21482 /GB=AAA83185.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 04      6grp_highest_nonorm > 21      6grp_total > 16      4grp_total > 51      6grp_highest_sub > 01_02      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1661
1 2 3 4 range
A 831.4
(-0.5)
P 		1791.2
(3)
P 		1323.7
(1.3)
P 		130.2
(-3)
A 		1661
B 820.6
(-0.3)
P 		1511.6
(3)
P 		902
(0.1)
P 		271.1
(-3)
A 		1241
C 452.5
(-2.1)
P 		1486.9
(3)
P 		758.3
(-0.6)
P 		280.6
(-3)
A 		1206
avr 701.5
(-0.9) 		1596.6
(3) 		994.7
(0.4) 		227.3
(-3) 		1369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1228
1 2 3 4 5 6 range
A 1515
(3)
P 		1512.7
(3)
P 		1056.9
(-1)
P 		824
(-3)
P 		1009.7
(-1.4)
P 		842
(-2.8)
P 		691
B 1383.6
(0)
P 		1879.8
(3)
P 		1484.6
(0.6)
P 		881.1
(-3)
P 		1152.9
(-1.4)
P 		986.7
(-2.4)
P 		999
C 2015.9
(3)
P 		1723.9
(1.6)
P 		1154.4
(-1.2)
P 		787.6
(-3)
P 		1178.7
(-1.1)
P 		944.5
(-2.2)
P 		1228
avr 1638.2
(2.5) 		1705.5
(3) 		1232
(-0.2) 		830.9
(-3) 		1113.8
(-1.1) 		924.4
(-2.4) 		875
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 302.7
(1.6)
P 		388.8
(3)
P 		346
(2.3)
P 		19.1
(-3)
A 		370
B 261.7
(0.9)
P 		373.3
(3)
P 		209
(-0.1)
P 		57.8
(-3)
A 		316
C 149.8
(-1.4)
P 		427.5
(3)
P 		264.3
(0.4)
P 		47.3
(-3)
A 		380
avr 238.1
(0.3) 		396.5
(3) 		273.1
(0.9) 		41.4
(-3) 		355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 589
1 2 3 4 5 6 range
A 279.3
(-1.7)
P 		538
(3)
P 		230.2
(-2.5)
P 		209
(-2.9)
P 		304.7
(-1.2)
P 		205
(-3)
P 		333
B 481.4
(0.8)
P 		625.7
(3)
P 		360.5
(-1.1)
P 		233.4
(-3)
P 		468.4
(0.6)
P 		367.9
(-0.9)
P 		392
C 747.2
(3)
P 		526
(0.7)
P 		293.8
(-1.6)
P 		158.4
(-3)
P 		381.4
(-0.7)
P 		316.2
(-1.4)
P 		589
avr 502.6
(2) 		563.2
(3) 		294.8
(-1.4) 		200.3
(-3) 		384.8
(0.1) 		296.4
(-1.4) 		363
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188138_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16496
Sequence Type Exemplar sequence
Representative Public ID M03A8.4 NCBI
Target Description M03A8.4 /REP_DB=WormBase Gene ID /WP=CE28346 /GEN=gei-15 /TR=Q21482 /GB=AAA83185.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076746(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076746 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-15) (gei-15) mRNA, complete cds. 10/11 None
GENEFINDER00000018344 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6820154:6823199:-1 10/11 None
SNAP00000018338 ENSEMBL cdna:SNAP chromosome:CEL140:X:6820186:6823199:-1 10/11 None
M03A8.4.1 ENSEMBL cdna:known chromosome:CEL140:X:6819983:6823221:-1 gene:M03A8.4 10/11 None
M03A8.4.2 ENSEMBL cdna:known chromosome:CEL140:X:6820018:6823223:-1 gene:M03A8.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6820153-6822461(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gei-15
Ensembl M03A8.4
Entrez Gene 180951 Entrez gene
SwissProt Q21482 EMBL-EBI
WormBase CE34940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83185 Gex interacting protein protein 15 [Caenorhabditis elegans] ref|NP_509147.2| GEX Interacting protein family member (gei-15) [Caenorhabditis elegans] 0.0
blast CAE65795 Hypothetical protein CBG10900 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188138_S_AT
ggatcgcaatctaacttggggccaaaggatggacgtaatagcggcaaaacatcggagttg
tcttttgaatattatcagtccaaacaaacaaattgtgtcaccacgtatcatacaaaaaaa
atgaaaaaaaaaaaaaacgtttcagtcgcttcttctgttttctcggatccatcgtaccgt
ttggataccaaaaccggataccttatcaccaatcctcgggaactgattcatcaatttgca
acaatgactccagtggcgactattgacgacagtgtcaataacacaccagccacccatatc
acccaaaaacaaagttactacaagagaaccgaggagaccactgaagaacaattcgcgcca
catgcaccatacaaagcaaatcatcccgtcgcttctcccaacaaatttgtccgccaactt
cgagacgataacctaacccatagccaacgcgaagccaacacccacactgagccagtatac
caaagagatccaaattacaatcaacgattccaggagattagaaccaaatctacatcctat
tccagaggaggagatgatattgaccaacttactcaacaacttgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCGCAATCTAACTTGGGGCCAA 7 513 691 Antisense
AAAACGTTTCAGTCGCTTCTTCTGT 133 131 824 Antisense
CTGTTTTCTCGGATCCATCGTACCG 706 235 845 Antisense
ACCGGATACCTTATCACCAATCCTC 631 87 883 Antisense
GACTCCAGTGGCGACTATTGACGAC 34 375 936 Antisense
GCGCCACATGCACCATACAAAGCAA 377 287 1045 Antisense
CAAAGCAAATCATCCCGTCGCTTCT 587 191 1062 Antisense
ATTTGTCCGCCAACTTCGAGACGAT 109 19 1095 Antisense
AACACCCACACTGAGCCAGTATACC 503 123 1147 Antisense
ACCAAATCTACATCCTATTCCAGAG 452 83 1213 Antisense
GACCAACTTACTCAACAACTTGTCA 302 383 1252 Antisense
Sequence Source Affymetrix Proprietary Database