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[188137_s_at]

Description F27C1.7 /REP_DB=WormBase Gene ID /WP=CE09719 /TR=P91283 /GB=AAB37654.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 17      6grp_total > 52      4grp_total > 40      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2796
1 2 3 4 range
A 12606.8
(-3)
P 		13048.5
(-1)
P 		13955.7
(3)
P 		13405.4
(0.6)
P 		1349
B 11910.8
(-3)
P 		13208.6
(-0.2)
P 		14706.7
(3)
P 		12107
(-2.6)
P 		2796
C 12396.7
(-3)
P 		12946.9
(1.2)
P 		12751.3
(-0.3)
P 		13173.7
(3)
P 		777
avr 12304.8
(-3) 		13068
(0.1) 		13804.6
(3) 		12895.4
(-0.6) 		1500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6365
1 2 3 4 5 6 range
A 10153.7
(-0.9)
P 		12227.6
(2.1)
P 		12865.6
(3)
P 		11427
(0.9)
P 		9888.6
(-1.3)
P 		8705.7
(-3)
P 		4160
B 10904.9
(-0.3)
P 		11480.8
(0.3)
P 		14372.4
(3)
P 		11132.4
(-0.1)
P 		10688.7
(-0.5)
P 		8007.8
(-3)
P 		6365
C 10701.8
(-0.5)
P 		10983.3
(-0)
P 		12787.4
(3)
P 		12332.7
(2.2)
P 		10808.4
(-0.3)
P 		9197.1
(-3)
P 		3590
avr 10586.8
(-0.5) 		11563.9
(0.7) 		13341.8
(3) 		11630.7
(0.8) 		10461.9
(-0.7) 		8636.9
(-3) 		4705
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2628
1 2 3 4 range
A 4590.1
(3)
P 		2832.5
(-1)
P 		3648.3
(0.8)
P 		1962.3
(-3)
P 		2628
B 3798.3
(3)
P 		3262.2
(0.4)
P 		3407.9
(1.1)
P 		2580
(-3)
P 		1218
C 4103.7
(2.1)
P 		3722.3
(1.1)
P 		4444.2
(3)
P 		2221.3
(-3)
P 		2223
avr 4164
(3) 		3272.3
(0.2) 		3833.5
(2) 		2254.5
(-3) 		1910

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2477
1 2 3 4 5 6 range
A 1871.7
(-3)
P 		4348.7
(3)
P 		2801.9
(-0.7)
P 		2898.2
(-0.5)
P 		2983.9
(-0.3)
P 		2119.6
(-2.4)
P 		2477
B 3794.4
(0.6)
P 		3821.5
(0.8)
P 		3490
(-0.7)
P 		2948.6
(-3)
P 		4342.7
(3)
P 		2986.1
(-2.8)
P 		1394
C 3966.7
(3)
P 		3351.3
(0.5)
P 		3254.6
(0.1)
P 		2480.1
(-3)
P 		3497.4
(1.1)
P 		3078.8
(-0.6)
P 		1487
avr 3210.9
(-0.4) 		3840.5
(3) 		3182.2
(-0.6) 		2775.6
(-2.7) 		3608
(1.7) 		2728.2
(-3) 		1112
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188137_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1424
Sequence Type Exemplar sequence
Representative Public ID F27C1.7 NCBI
Target Description F27C1.7 /REP_DB=WormBase Gene ID /WP=CE09719 /TR=P91283 /GB=AAB37654.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026250(11), NM_001026249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026250 NCBI Caenorhabditis elegans F27C1.7b (ATPase) mRNA, complete cds. 11/11 None
NM_001026249 NCBI Caenorhabditis elegans F27C1.7a (ATPase) mRNA, complete cds. 11/11 None
SNAP00000014503 ENSEMBL cdna:SNAP chromosome:CEL140:I:5428780:5429623:-1 11/11 None
GENEFINDER00000014527 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5428780:5429623:-1 11/11 None
F27C1.7b ENSEMBL cdna:known chromosome:CEL140:I:5428542:5429837:-1 gene:F27C1.7 11/11 None
F27C1.7a.5 ENSEMBL cdna:known chromosome:CEL140:I:5428780:5429803:-1 gene:F27C1.7 11/11 None
F27C1.7a.1 ENSEMBL cdna:known chromosome:CEL140:I:5428780:5429626:-1 gene:F27C1.7 11/11 None
F27C1.7a.2 ENSEMBL cdna:known chromosome:CEL140:I:5428780:5429876:-1 gene:F27C1.7 11/11 None
F27C1.7a.3 ENSEMBL cdna:known chromosome:CEL140:I:5428780:5429633:-1 gene:F27C1.7 11/11 None
F27C1.7a.4 ENSEMBL cdna:known chromosome:CEL140:I:5428780:5429682:-1 gene:F27C1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5428779-5429623(-) 100.0 100.0
Public Domain and Genome References
Ensembl F27C1.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR25649 Atp synthase subunit protein 3, isoform b [Caenorhabditis elegans] ref|NP_001021421.1| F27C1.7b [Caenorhabditis elegans] 1.0E-120
blast AAB37654 Atp synthase subunit protein 3, isoform a [Caenorhabditis elegans] ref|NP_001021420.1| F27C1.7a [Caenorhabditis elegans] 1.0E-108
blast AAR25649 Atp synthase subunit protein 3, isoform b [Caenorhabditis elegans] ref|NP_001021421.1| F27C1.7b [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR000711 EMBL-EBI H+-transporting two-sector ATPase, delta (OSCP) subunit 3.2E-52
Pfam IPR000711 EMBL-EBI H+-transporting two-sector ATPase, delta (OSCP) subunit 3.2E-52
Sequence
Target Sequence 
>C. ELEGANS:188137_S_AT
catgaaacgcggattctccacgagcgctgctctcgctaaggctcagctggtgaagacccc
gattcaggttcatggagtcgagggacgttacgccgccgctctttactcagccggacacaa
acagaacaagctcgaccagatttccacagatctgaacaatgttcgctccgtgtacaagga
caacaagaagttccaagagttcgtcctcgacccaactctcaaggccaacaagaagaagac
cgccatcgaggctatctcaactaaattggggcttaccaaagagactggaaacttccttgg
acttttggctgagaacggacgtctgaacaagctcgagtcagttgtttcttcattcgaatc
catcatgcgcgctcaccgtggagaacttttcgttcaggtcacctccgccgaagaattgag
ctcatcaaaccagaaggcattgtctgatgcccttagcaagatcggaaagtctggacaaaa
gctcacggtgacttatgccgtcaagccatcgattcttggaggacttgttgtcactatcgg
agacaagtacgtcgatctgtcgatcgcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGAAACGCGGATTCTCCACGAGC 507 209 24 Antisense
GAAGACCCCGATTCAGGTTCATGGA 617 339 75 Antisense
AGAACAAGCTCGACCAGATTTCCAC 455 73 146 Antisense
TGAACAATGTTCGCTCCGTGTACAA 305 573 176 Antisense
AGAAGACCGCCATCGAGGCTATCTC 85 75 257 Antisense
GGAAACTTCCTTGGACTTTTGGCTG 504 525 310 Antisense
AACGGACGTCTGAACAAGCTCGAGT 455 141 337 Antisense
GCTCGAGTCAGTTGTTTCTTCATTC 491 299 354 Antisense
CTTCATTCGAATCCATCATGCGCGC 445 221 371 Antisense
CGCGCTCACCGTGGAGAACTTTTCG 96 253 391 Antisense
GTACGTCGATCTGTCGATCGCTTCC 95 459 570 Antisense
Sequence Source Affymetrix Proprietary Database