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[188134_at]

Description C18A11.5 /REP_DB=WormBase Gene ID /WP=CE24807 /GEN=xol-1 /TR=Q18064 /GB=AAC69009.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 10      6grp_cgc > 67      6grp_cgc_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.8
(-1.8)
A 		3.6
(-2.8)
A 		3
(-3)
A 		17.6
(3)
A 		15
B 1.8
(-3)
A 		4.3
(1.4)
A 		4
(0.9)
A 		5.2
(3)
A 		3
C 1.7
(-2.8)
A 		5.1
(-0.8)
A 		1.4
(-3)
A 		11.4
(3)
A 		10
avr 3.1
(-2.8) 		4.3
(-2) 		2.8
(-3) 		11.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.8
(-2)
A 		1.9
(-3)
A 		4.7
(-2)
A 		6.4
(-1.4)
A 		12.3
(0.7)
A 		18.6
(3)
A 		17
B 3.2
(-0.9)
A 		5
(2.3)
A 		5.4
(3)
A 		4.6
(1.6)
A 		2.6
(-1.9)
A 		2
(-3)
A 		3
C 2.6
(-1.7)
A 		4.2
(0.2)
A 		5.1
(1.3)
A 		6.5
(3)
A 		2.9
(-1.3)
A 		1.5
(-3)
A 		5
avr 3.5
(-3) 		3.7
(-2.7) 		5.1
(-0.5) 		5.8
(0.5) 		5.9
(0.7) 		7.4
(3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.1
(1.3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		2.6
(3)
A 		2
B 0.6
(-3)
A 		1.1
(3)
A 		0.9
(0.6)
A 		1.1
(3)
A 		1
C 0.6
(-2.6)
A 		1.5
(1.3)
A 		0.5
(-3)
A 		1.9
(3)
A 		1
avr 1.1
(-1) 		1.1
(-1) 		0.7
(-3) 		1.9
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.9
(-2.7)
A 		0.7
(-3)
A 		1
(-2.5)
A 		1.6
(-1.6)
A 		3.7
(1.7)
A 		4.5
(3)
A 		4
B 1.1
(-1)
A 		1.7
(3)
A 		1.3
(0.3)
A 		1.2
(-0.3)
A 		1.1
(-1)
A 		0.8
(-3)
A 		1
C 1
(0.8)
A 		1.3
(3)
A 		1.3
(3)
A 		1.3
(3)
A 		0.9
(0)
A 		0.5
(-3)
A 		1
avr 1
(-3) 		1.2
(-1.7) 		1.2
(-1.7) 		1.4
(-0.3) 		1.9
(3) 		1.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16211
Sequence Type Exemplar sequence
Representative Public ID C18A11.5 NCBI
Target Description C18A11.5 /REP_DB=WormBase Gene ID /WP=CE24807 /GEN=xol-1 /TR=Q18064 /GB=AAC69009.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029248(11), NM_001029247(9), NM_001029246(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029248 NCBI Caenorhabditis elegans XO Lethal family member (xol-1) (xol-1) mRNA, complete cds. 11/11 None
NM_001029247 NCBI Caenorhabditis elegans XO Lethal family member (xol-1) (xol-1) mRNA, complete cds. 9/11 None
NM_001029246 NCBI Caenorhabditis elegans XO Lethal family member (xol-1) (xol-1) mRNA, complete cds. 9/11 None
SNAP00000023787 ENSEMBL cdna:SNAP chromosome:CEL140:X:8041267:8043624:1 9/11 None
GENEFINDER00000023795 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8041267:8043624:1 9/11 None
C18A11.5c ENSEMBL cdna:known chromosome:CEL140:X:8041267:8044349:1 gene:C18A11.5 11/11 A 
C18A11.5a ENSEMBL cdna:known chromosome:CEL140:X:8041267:8042946:1 gene:C18A11.5 9/11 None
C18A11.5b ENSEMBL cdna:known chromosome:CEL140:X:8041267:8043624:1 gene:C18A11.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8041265-8044348(+) 100.0 100.0
Public Domain and Genome References
Ensembl C18A11.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ91910 Xo lethal protein 1, isoform c [Caenorhabditis elegans] ref|NP_001024419.1| XO Lethal family member (xol-1) [Caenorhabditis elegans] gb|AAA67047.1| product of the 1.5kb transcript 0.0
blast AAA67048 product of the 2.5kb transcript 0.0
blast AAQ91909 Xo lethal protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024418.1| XO Lethal family member (xol-1) [Caenorhabditis elegans] gb|AAA67049.1| product of the 2.2kb transcript pdb|1MG7|B Chain B, Crystal Structure Of Xol-1 pdb|1MG7|A Chain A, Crystal Structure Of Xol-1 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024419.1 1 338-360
C18A11.5c 1 338-360
Sequence
Target Sequence 
>C. ELEGANS:188134_AT
tttcacaccacaaatgtttccctctcaagctaaagctaagcttcttcgagatgcgttcaa
caatgaggaagacgaggatacgtttcccgatattctagttccagcatatatgacggctca
ttccaagaaccgtgtgcgacaagaagattatacttgtcttgaagtagagtttgatagcca
agttgctcttgaaaaactaatgaacgaacatgagcaagtagaaggtttcgaagttcaaca
aggaggaatcttagtggcgttgaagaaagactcatttttcgacgacgagctgattgaaaa
aattgcttactcagcgcaatactacttatctatgacacatttttcaaatcgaatctcaat
cccccttttcagttcacttgtttttcttacagtatctattgtaattaacgccatgtgtca
caaatctatattttgtaaacgagttatctcgcgactgccttttccacattgccaaatctt
gaaattgtcacatttttccactggtcgaacatttctctcatatctgtctatcattgccaa
atgtacccccatttcccatatcaatcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCACACCACAAATGTTTCCCTCT 278 673 672 Antisense
TGTTTCCCTCTCAAGCTAAAGCTAA 475 559 686 Antisense
GCTAAGCTTCTTCGAGATGCGTTCA 195 303 706 Antisense
GAAGACGAGGATACGTTTCCCGATA 430 339 739 Antisense
TTTCCCGATATTCTAGTTCCAGCAT 675 669 754 Antisense
GTTCCAGCATATATGACGGCTCATT 446 441 769 Antisense
GCTCATTCCAAGAACCGTGTGCGAC 141 301 787 Antisense
GAGTTTGATAGCCAAGTTGCTCTTG 429 399 838 Antisense
GACTCATTTTTCGACGACGAGCTGA 188 371 940 Antisense
TATCATTGCCAAATGTACCCCCATT 65 659 1200 Antisense
CCCCATTTCCCATATCAATCAATCA 612 261 1218 Antisense
Sequence Source Affymetrix Proprietary Database