[Home] | [Total List]

[188130_s_at] kinesin-like protein

Description C33H5.4 /REP_DB=WormBase Gene ID /WP=CE04148 /GEN=klp-10 /TR=Q18413 /GB=AAA82277.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 32      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 8
(-3)
A 		34.4
(-0.6)
A 		72.8
(3)
A 		46.3
(0.5)
A 		65
B 9.8
(-3)
A 		74.5
(3)
A 		31.5
(-1)
A 		27.9
(-1.3)
A 		65
C 24.5
(-3)
A 		46.4
(-1.6)
A 		82.2
(0.7)
A 		118.7
(3)
A 		94
avr 14.1
(-3) 		51.8
(1.5) 		62.2
(2.7) 		64.3
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 9.1
(-3)
A 		32.8
(-2.4)
A 		37
(-2.3)
A 		31.3
(-2.5)
A 		174.1
(1.1)
P 		253.4
(3)
P 		244
B 5.6
(-3)
A 		9.7
(-2.9)
A 		63.6
(-2)
A 		84.8
(-1.7)
A 		176.3
(-0.2)
P 		366.2
(3)
P 		361
C 8.8
(-3)
A 		22.1
(-2.8)
A 		48.3
(-2.3)
A 		108
(-1.3)
A 		161.5
(-0.4)
P 		361.5
(3)
P 		353
avr 7.8
(-3) 		21.5
(-2.7) 		49.6
(-2.2) 		74.7
(-1.7) 		170.6
(0.1) 		327
(3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.9
(-3)
A 		7.5
(-1.3)
A 		19
(3)
A 		6.8
(-1.5)
A 		16
B 3.1
(-3)
A 		18.4
(3)
A 		7.3
(-1.4)
A 		5.9
(-1.9)
A 		15
C 8.1
(-3)
A 		13.3
(-1.5)
A 		28.6
(3)
A 		20
(0.5)
A 		21
avr 4.7
(-3) 		13.1
(0.7) 		18.3
(3) 		10.9
(-0.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 1.7
(-3)
A 		11.7
(-2)
A 		8.1
(-2.4)
A 		7.9
(-2.4)
A 		52.5
(2.1)
P 		61.7
(3)
P 		60
B 2
(-3)
A 		3.2
(-2.9)
A 		15.4
(-2.4)
A 		22.5
(-2.1)
A 		71.6
(0.1)
P 		136.5
(3)
P 		135
C 3.3
(-3)
A 		6.7
(-2.8)
A 		12.3
(-2.5)
A 		21.7
(-2.1)
A 		52.3
(-0.5)
P 		121
(3)
P 		118
avr 2.3
(-3) 		7.2
(-2.7) 		11.9
(-2.4) 		17.4
(-2.1) 		58.8
(0.3) 		106.4
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188130_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9938
Sequence Type Exemplar sequence
Representative Public ID C33H5.4 NCBI
Target Description C33H5.4 /REP_DB=WormBase Gene ID /WP=CE04148 /GEN=klp-10 /TR=Q18413 /GB=AAA82277.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068692(11), NM_001027873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068692 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-18) (klp-18) mRNA, complete cds. 11/11 A 
NM_001027873 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-10) (klp-10) mRNA, complete cds. 11/11 None
SNAP00000004485 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7797175:7799796:1 11/11 None
GENEFINDER00000004495 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7797175:7800235:1 9/11 None
SNAP00000008742 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7040196:7043281:1 11/11 None
GENEFINDER00000008746 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7040196:7043281:1 11/11 None
C06G3.2 ENSEMBL cdna:known chromosome:CEL140:IV:7040195:7043678:1 gene:C06G3.2 11/11 A 
C33H5.4a ENSEMBL cdna:known chromosome:CEL140:IV:7797104:7800382:1 gene:C33H5.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027874 3/11 Cross Hyb Matching Probes None
C33H5.4b 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565411 2 1 NM_001027873 183333_at (11), 188130_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7797180-7799802(+) 100.0 100.0
chrIV:7040201-7042848(+) 97.15 97.15
Public Domain and Genome References
Gene Title kinesin-like protein
Gene Symbol klp-18
Ensembl C06G3.2
C33H5.4
Entrez Gene 177474 Entrez gene
WormBase CE07978 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252691_AT kinesin motor protein-related at
CANINE:1596180_AT similar to kinesin family member 15 cfa
CANINE_2:CFA.17141.1.S1_AT similar to kinesin family member 15 cfa
CANINE_2:CFA.20053.1.S1_S_AT similar to kinesin family member 15 cfa
CANINE_2:CFAAFFX.21784.1.S1_AT similar to kinesin family member 15 cfa
CANINE_2:CFAAFFX.21784.1.S1_S_AT similar to kinesin family member 15 cfa
CANINE_2:CFAAFFX.21794.1.S1_AT similar to kinesin family member 15 cfa
CHICKEN:GGA.10632.1.S1_S_AT kinesin family member 15 gga
CHICKEN:GGA.9398.1.S1_AT kinesin family member 15 gga
CHICKEN:GGAAFFX.23697.1.S1_AT kinesin family member 15 gga
CHICKEN:GGAAFFX.23700.1.S1_AT kinesin family member 15 gga
CHICKEN:GGAAFFX.23700.2.S1_S_AT kinesin family member 15 gga
HG-U133_PLUS_2:219306_AT kinesin family member 15 hs
HG-U133A:219306_AT kinesin family member 15 hs
HG-FOCUS:219306_AT kinesin family member 15 hs
HG-U133A_2:219306_AT kinesin family member 15 hs
U133_X3P:G9910265_3P_AT kinesin family member 15 hs
HG-U95E:77201_AT kinesin family member 15 hs
HU35KSUBB:RC_T81035_AT Kinesin family member 15 hs
MOUSE430_2:1431718_AT kinesin family member 15 mm
MOE430B:1431718_AT kinesin family member 15 mm
MU11KSUBA:C79507_RC_F_AT kinesin family member 15 mm
MG-U74BV2:115498_AT kinesin family member 15 mm
MG-U74BV2:115499_G_AT kinesin family member 15 mm
MG-U74BV2:108287_R_AT kinesin family member 15 mm
MG-U74BV2:164299_F_AT kinesin family member 15 mm
MU19KSUBB:TC34186_AT kinesin family member 15 mm
RAT230_2:1374794_AT kinesin-like 7 rn
RAE230A:1374794_AT kinesin-like 7 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5875 microtubule associated complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03132 Kinesin-like protein protein 18 [Caenorhabditis elegans] ref|NP_501093.1| Kinesin-Like Protein family member (klp-18) [Caenorhabditis elegans] gb|AAO34669.1| kinesin-like protein-18 [Caenorhabditis elegans] 0.0
blast BAB19356.2 kinesin like protein KLP-18 [Caenorhabditis elegans] 0.0
blast AAA82277 Kinesin-like protein protein 10, isoform a [Caenorhabditis elegans] ref|NP_001023044.1| Kinesin-Like Protein family member (klp-10) [Caenorhabditis elegans] dbj|BAB82459.1| Kinesin like protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.3E-121
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.5E-114
Pfam IPR001752 EMBL-EBI Kinesin, motor region 2.1E-113
Sequence
Target Sequence 
>C. ELEGANS:188130_S_AT
gtttccattgtatccgagagtctgaggaagtccgaagcagtggccgagggatacaaggag
aaagtggcagcaaacaacttaacactagataagttgcttctccatattgatgcttcgaga
aaacgcattgctgaactcgagttgagcagcaaggaaagtgaaaatcgatccagcgaagaa
ttggaggtcgacgagctccaactctcaaatgccacaatcaagaagcttaacgctgatcta
agcaccaaagccggcctcattcgatctctcgaggattccatcgagaaaaagtctcagatg
atcactcggctggaagagcaggccgtccttgatagctccgagttgagctctactaagcgt
caactggagcattcaaggctggaagcgattcagtggaggaaaatttccgatgagaccact
tctgccatgcaaacacagctcaaagatcatcaaacggatattgatcaatgcaggcacaag
aagaaatcggagattcaatcaatgcaactctcgctggacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCCATTGTATCCGAGAGTCTGA 273 451 1510 Antisense
GAAGTCCGAAGCAGTGGCCGAGGGA 339 335 1536 Antisense
ATAAGTTGCTTCTCCATATTGATGC 606 23 1598 Antisense
GCTGATCTAAGCACCAAAGCCGGCC 572 295 1741 Antisense
GGCCTCATTCGATCTCTCGAGGATT 465 543 1762 Antisense
AAAGTCTCAGATGATCACTCGGCTG 188 123 1797 Antisense
AAGAGCAGGCCGTCCTTGATAGCTC 129 155 1823 Antisense
TCCGAGTTGAGCTCTACTAAGCGTC 704 593 1846 Antisense
AAGCGTCAACTGGAGCATTCAAGGC 604 149 1864 Antisense
CACTTCTGCCATGCAAACACAGCTC 219 197 1926 Antisense
ATCAATGCAACTCTCGCTGGACAAT 325 27 2007 Antisense
Sequence Source Affymetrix Proprietary Database