[Home] | [Total List]

[188127_at] EGF-domain protein

Description C40H5.7 /REP_DB=WormBase Gene ID /WP=CE08655 /GB=CAB03958.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=EGF-domain protein
Cluster 6grp_total > 0      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 2.3
(-3)
A 		43.7
(3)
A 		34.2
(1.6)
A 		10.3
(-1.8)
A 		41
B 4.1
(-3)
A 		11.3
(-1.3)
A 		23.4
(1.6)
A 		29.4
(3)
A 		25
C 6
(-2.9)
A 		29.7
(3)
A 		5.6
(-3)
A 		19
(0.3)
A 		24
avr 4.1
(-3) 		28.2
(3) 		21.1
(1.2) 		19.6
(0.9) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.2
(-1.2)
A 		23.1
(3)
A 		8.6
(-1)
A 		4.1
(-2.3)
A 		4
(-2.3)
A 		1.6
(-3)
A 		22
B 3.6
(-0.7)
A 		8.1
(3)
A 		0.8
(-3)
A 		2
(-2)
A 		1.1
(-2.8)
A 		4.6
(0.1)
A 		7
C 1.4
(-3)
A 		4.3
(-2.1)
A 		2.4
(-2.7)
A 		5.2
(-1.8)
A 		20.1
(3)
A 		5.2
(-1.8)
A 		19
avr 4.4
(-2.6) 		11.8
(3) 		3.9
(-2.9) 		3.8
(-3) 		8.4
(0.5) 		3.8
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-3)
A 		9.5
(3)
A 		8.9
(2.6)
A 		1.5
(-2.5)
A 		9
B 1.3
(-3)
A 		2.8
(-1.2)
A 		5.4
(1.9)
A 		6.3
(3)
A 		5
C 2
(-3)
A 		8.5
(3)
A 		2
(-3)
A 		3.2
(-1.9)
A 		7
avr 1.4
(-3) 		6.9
(3) 		5.4
(1.4) 		3.7
(-0.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.5
(-2.2)
A 		8.2
(3)
A 		1.9
(-1.8)
A 		1
(-2.5)
A 		1.2
(-2.4)
A 		0.4
(-3)
A 		8
B 1.2
(-0.6)
A 		2.7
(3)
A 		0.2
(-3)
A 		0.5
(-2.3)
A 		0.5
(-2.3)
A 		1.7
(0.6)
A 		3
C 0.5
(-3)
A 		1.3
(-2.2)
A 		0.6
(-2.9)
A 		1
(-2.5)
A 		6.5
(3)
A 		1.8
(-1.7)
A 		6
avr 1.1
(-2.5) 		4.1
(3) 		0.9
(-2.8) 		0.8
(-3) 		2.7
(0.5) 		1.3
(-2.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188127_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16837
Sequence Type Exemplar sequence
Representative Public ID C40H5.7 NCBI
Target Description C40H5.7 /REP_DB=WormBase Gene ID /WP=CE08655 /GB=CAB03958.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=EGF-domain protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077565 NCBI Caenorhabditis elegans C40H5.7 (C40H5.7) mRNA, complete cds. 11/11 None
C40H5.7 ENSEMBL cdna:known chromosome:CEL140:X:11746202:11746854:1 gene:C40H5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11746201-11746854(+) 100.0 100.0
Public Domain and Genome References
Gene Title EGF-domain protein
Ensembl C40H5.7
Entrez Gene 183373 Entrez gene
SwissProt Q9BIA0 EMBL-EBI
WormBase CE08655 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03958 Hypothetical protein C40H5.7 [Caenorhabditis elegans] ref|NP_509966.1| C40H5.7 [Caenorhabditis elegans] 5.0E-60
blast CAE57333 Hypothetical protein CBG00262 [Caenorhabditis briggsae] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 2.1E-5
Sequence
Target Sequence 
>C. ELEGANS:188127_AT
aatcttcttgtcagaacatatcactgaatattatttcagaagggtcaccttgcgatagtc
atccgtgctggaatgaagggaagtgtctgttgaacgggtcgtcaaactatttctgcgagt
gtccaccagcgtttataggttttcaatgtgaatataggttcgataaatttgtcacttttc
tcaaatttctgataatttcacatcactttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTTCTTGTCAGAACATATCACT 596 169 59 Antisense
ATATTATTTCAGAAGGGTCACCTTG 569 17 86 Antisense
GTCACCTTGCGATAGTCATCCGTGC 604 465 102 Antisense
GCGATAGTCATCCGTGCTGGAATGA 142 291 110 Antisense
GGAAGTGTCTGTTGAACGGGTCGTC 159 533 137 Antisense
AACGGGTCGTCAAACTATTTCTGCG 53 145 151 Antisense
CAAACTATTTCTGCGAGTGTCCACC 211 191 161 Antisense
GAGTGTCCACCAGCGTTTATAGGTT 437 401 175 Antisense
CCAGCGTTTATAGGTTTTCAATGTG 631 271 184 Antisense
GTTCGATAAATTTGTCACTTTTCTC 13 443 216 Antisense
CTGATAATTTCACATCACTTTCAAA 309 239 247 Antisense
Sequence Source Affymetrix Proprietary Database