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[188126_at] 7TM chemoreceptor, sra family

Description AH6.12 /REP_DB=WormBase Gene ID /WP=CE01453 /GEN=sra-8 /TR=SW:Q09210 /GB=CAA88085.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 01      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 18.8
(1.2)
A 		4
(-3)
A 		4.4
(-2.9)
A 		25
(3)
A 		21
B 4
(-2.7)
A 		3.1
(-3)
A 		15.5
(1.4)
A 		20.1
(3)
A 		17
C 5.8
(-3)
A 		5.7
(-3)
A 		5.7
(-3)
A 		32.2
(3)
A 		27
avr 9.5
(-1.5) 		4.3
(-3) 		8.5
(-1.8) 		25.8
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.1
(-1.9)
A 		13.8
(1.3)
A 		5
(-1.9)
A 		2
(-3)
A 		18.3
(3)
A 		2.6
(-2.8)
A 		16
B 2.8
(-2.5)
A 		3.2
(-2.1)
A 		2.3
(-3)
A 		8.1
(3)
A 		4.9
(-0.3)
A 		4.3
(-0.9)
A 		6
C 2
(-3)
A 		2.4
(-2.6)
A 		2.3
(-2.7)
A 		3
(-1.9)
A 		7.6
(3)
A 		5.4
(0.6)
A 		6
avr 3.3
(-2.9) 		6.5
(-0.2) 		3.2
(-3) 		4.4
(-2) 		10.3
(3) 		4.1
(-2.2) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.9
(3)
A 		0.9
(-3)
A 		1.1
(-2.8)
A 		3.7
(-0.2)
A 		6
B 1.3
(-2.1)
A 		0.8
(-3)
A 		3.6
(1.8)
A 		4.3
(3)
A 		4
C 1.9
(-2.5)
A 		1.6
(-3)
A 		2
(-2.4)
A 		5.4
(3)
A 		4
avr 3.4
(1.1) 		1.1
(-3) 		2.2
(-1.1) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.9
(-2.5)
A 		4.9
(2.3)
A 		1.1
(-2.3)
A 		0.5
(-3)
A 		5.5
(3)
A 		0.6
(-2.9)
A 		5
B 1
(-1.4)
A 		1.1
(-1)
A 		0.6
(-3)
A 		2.1
(3)
A 		2
(2.6)
A 		1.6
(1)
A 		2
C 0.7
(-2.7)
A 		0.7
(-2.7)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2.5
(3)
A 		1.8
(0.8)
A 		2
avr 0.9
(-2.8) 		2.2
(0.4) 		0.8
(-3) 		1.1
(-2.3) 		3.3
(3) 		1.3
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3852
Sequence Type Exemplar sequence
Representative Public ID AH6.12 NCBI
Target Description AH6.12 /REP_DB=WormBase Gene ID /WP=CE01453 /GEN=sra-8 /TR=SW:Q09210 /GB=CAA88085.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063646(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063646 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-8) (sra-8) mRNA, complete cds. 11/11 None
AH6.12 ENSEMBL cdna:known chromosome:CEL140:II:9537639:9538932:1 gene:AH6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9537635-9538929(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-8
Ensembl AH6.12
Entrez Gene 191779 Entrez gene
SwissProt Q09210 EMBL-EBI
WormBase CE01453 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88085 Hypothetical protein AH6.12 [Caenorhabditis elegans] ref|NP_496047.1| Serpentine Receptor, class A (alpha) family member (sra-8) [Caenorhabditis elegans] sp|Q09210|SRA8_CAEEL Serpentine receptor class alpha-8 (Protein sra-8) prf||2123261H chemosensory receptor 0.0
blast CAE71739 Hypothetical protein CBG18723 [Caenorhabditis briggsae] 5.0E-98
blast CAA88082 Hypothetical protein AH6.14 [Caenorhabditis elegans] ref|NP_496046.1| Serpentine Receptor, class A (alpha) family member (sra-9) [Caenorhabditis elegans] sp|Q09212|SRA9_CAEEL Serpentine receptor class alpha-9 (Protein sra-9) 4.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496047.1 6 20-42,57-79,141-163,188-210,231-253,273-294
AH6.12 6 20-42,57-79,141-163,188-210,231-253,273-294
Sequence
Target Sequence 
>C. ELEGANS:188126_AT
aatgatctctaccacatcaactgggaaacttgtaatttgggatgacccattagacgatgc
agttctggcgtgttttatatttccaaagaagagtaaagcaagatctaccatacactttta
cataagtactgttgtttcgttgtttaatttggcagcttctgtagcattgaacaaatacaa
caaaacgttggaatatcaagttcggttcaaaatctgcgcccgatttcataaacgtcaagt
catagagtcaacggagacaatttgctttctaaatttcactcaatttgtattcatgtttat
ttattcatctggtaattctacattgaaatcaattcgtgattacatccaaccagagacata
caatttttgggtcgtctggtgttatactgtcccatttatcgcattaacatttccactact
tttgatctacaaagtgaagtcaacgcgtggcattcgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGATCTCTACCACATCAACTGGG 202 165 465 Antisense
GGGATGACCCATTAGACGATGCAGT 62 497 503 Antisense
GATGCAGTTCTGGCGTGTTTTATAT 457 413 520 Antisense
AGATCTACCATACACTTTTACATAA 259 67 565 Antisense
CAAGTTCGGTTCAAAATCTGCGCCC 132 185 661 Antisense
TGCGCCCGATTTCATAAACGTCAAG 190 551 679 Antisense
GTGATTACATCCAACCAGAGACATA 429 485 800 Antisense
TGGGTCGTCTGGTGTTATACTGTCC 376 553 832 Antisense
TATACTGTCCCATTTATCGCATTAA 73 661 847 Antisense
ATCGCATTAACATTTCCACTACTTT 46 37 862 Antisense
TGAAGTCAACGCGTGGCATTCGAGC 164 575 899 Antisense
Sequence Source Affymetrix Proprietary Database