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[188125_at]

Description Y37A1B.12 /REP_DB=WormBase Gene ID /WP=CE19082 /GEN=tor-1 /TR=O45271 /GB=CAA19495.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 14      6grp_cgc > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 38.7
(3)
A 		4
(-2.9)
A 		3.7
(-3)
A 		38.2
(2.9)
A 		35
B 65.4
(3)
A 		24.9
(-2.6)
A 		21.8
(-3)
A 		30.9
(-1.7)
A 		44
C 14.4
(-2.9)
A 		25.9
(-1.9)
A 		13.4
(-3)
A 		81.2
(3)
A 		68
avr 39.5
(1.3) 		18.3
(-2.1) 		13
(-3) 		50.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 5.9
(-2.5)
A 		3.6
(-2.8)
A 		48.1
(3)
P 		36.6
(1.5)
A 		3.9
(-2.7)
A 		1.9
(-3)
A 		46
B 34.2
(0.6)
A 		54.1
(3)
A 		39
(1.1)
A 		19.3
(-1.3)
A 		21
(-1.1)
A 		5.2
(-3)
A 		49
C 50.2
(0.3)
A 		84.8
(2.7)
P 		4.4
(-3)
A 		88.6
(3)
A 		14.6
(-2.3)
A 		9.4
(-2.6)
A 		84
avr 30.1
(0.5) 		47.5
(2.9) 		30.5
(0.5) 		48.2
(3) 		13.2
(-1.9) 		5.5
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14.1
(3)
A 		0.9
(-3)
A 		1
(-3)
A 		5.6
(-0.9)
A 		13
B 20.8
(3)
A 		6.1
(-2.6)
A 		5
(-3)
A 		6.6
(-2.4)
A 		16
C 4.8
(-2.9)
A 		7.5
(-1.1)
A 		4.7
(-3)
A 		13.7
(3)
A 		9
avr 13.2
(3) 		4.8
(-2.3) 		3.6
(-3) 		8.6
(0.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.1
(-2.6)
A 		1.3
(-2.5)
A 		10.5
(3)
P 		9.3
(2.3)
A 		1.2
(-2.6)
A 		0.5
(-3)
A 		10
B 11.9
(0.7)
A 		18
(3)
A 		9.5
(-0.2)
A 		5.1
(-1.8)
A 		8.5
(-0.5)
A 		1.9
(-3)
A 		16
C 18.6
(1.2)
A 		25.9
(3)
P 		1.1
(-3)
A 		17.8
(1)
A 		4.7
(-2.1)
A 		3.2
(-2.5)
A 		25
avr 10.5
(0.9) 		15.1
(3) 		7
(-0.7) 		10.7
(1) 		4.8
(-1.7) 		1.9
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188125_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9682
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.12 NCBI
Target Description Y37A1B.12 /REP_DB=WormBase Gene ID /WP=CE19082 /GEN=tor-1 /TR=O45271 /GB=CAA19495.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070283 NCBI Caenorhabditis elegans human TORsin related family member (tor-1) (tor-1) mRNA, complete cds. 11/11 A 
SNAP00000004217 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13984483:13985662:-1 11/11 None
GENEFINDER00000004241 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13984483:13987436:-1 9/11 None
Y37A1B.12 ENSEMBL cdna:known chromosome:CEL140:IV:13984483:13987436:-1 gene:Y37A1B.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13984488-13987442(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tor-1
Ensembl Y37A1B.12
Entrez Gene 189605 Entrez gene
SwissProt O45271 EMBL-EBI
WormBase CE19082 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19495 Hypothetical protein Y37A1B.12 [Caenorhabditis elegans] ref|NP_502684.1| human TORsin related family member (tor-1) [Caenorhabditis elegans] 1.0E-180
blast CAA19495 Hypothetical protein Y37A1B.12 [Caenorhabditis elegans] ref|NP_502684.1| human TORsin related family member (tor-1) [Caenorhabditis elegans] 1.0E-168
blast CAA19495 Hypothetical protein Y37A1B.12 [Caenorhabditis elegans] ref|NP_502684.1| human TORsin related family member (tor-1) [Caenorhabditis elegans] 1.0E-166
blast CAA19484 Hypothetical protein Y37A1B.13 [Caenorhabditis elegans] ref|NP_502683.1| human TORsin related family member (tor-2) [Caenorhabditis elegans] 1.0E-145
blast CAA19484 Hypothetical protein Y37A1B.13 [Caenorhabditis elegans] ref|NP_502683.1| human TORsin related family member (tor-2) [Caenorhabditis elegans] 1.0E-136
blast CAA19484 Hypothetical protein Y37A1B.13 [Caenorhabditis elegans] ref|NP_502683.1| human TORsin related family member (tor-2) [Caenorhabditis elegans] 1.0E-124
blast CAE59779 Hypothetical protein CBG03231 [Caenorhabditis briggsae] 2.0E-95
blast CAE59779 Hypothetical protein CBG03231 [Caenorhabditis briggsae] 1.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Pfam IPR010448 EMBL-EBI Torsin 6.6E-86
Pfam IPR010448 EMBL-EBI Torsin 1.3E-94
Sequence
Target Sequence 
>C. ELEGANS:188125_AT
gaacaactaatacaatctgccgacggatgtgatcgatccattttcgtgtttgatgaggtg
gataaattacaaagtgaactggttcaaacaatcaaaccttttcttgatttttatccagcc
gtttttgaagttgactttcgaaaaactaccttcatttttctaagcaacaaaggaagctct
gaaattgcgaacattgcattggaacatcgtcgaaatcttaaaaaacggtcacaactcgag
ttgaagcattttgaacgaacacttatgtcacatgcattcaatgagaaaggtggtctacga
aacactgaattgatctctaatcagcttattgatcattatatcccatttcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAACTAATACAATCTGCCGACG 39 351 427 Antisense
TCTGCCGACGGATGTGATCGATCCA 315 609 442 Antisense
GATCGATCCATTTTCGTGTTTGATG 670 417 457 Antisense
GTTCAAACAATCAAACCTTTTCTTG 703 443 508 Antisense
GATTTTTATCCAGCCGTTTTTGAAG 666 417 532 Antisense
TGACTTTCGAAAAACTACCTTCATT 112 569 558 Antisense
GGAAGCTCTGAAATTGCGAACATTG 378 531 598 Antisense
GAACATTGCATTGGAACATCGTCGA 257 351 615 Antisense
GAACGAACACTTATGTCACATGCAT 429 347 679 Antisense
GAATTGATCTCTAATCAGCTTATTG 631 323 733 Antisense
TTGATCATTATATCCCATTTCTTCC 341 705 755 Antisense
Sequence Source Affymetrix Proprietary Database