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[188124_at] 7TM chemoreceptor, sra family

Description AH6.14 /REP_DB=WormBase Gene ID /WP=CE01455 /GEN=sra-9 /TR=SW:Q09212 /GB=CAA88082.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 10      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 31.9
(-2)
A 		16.3
(-3)
A 		39.9
(-1.5)
A 		112.2
(3)
A 		96
B 5.7
(-3)
A 		44.7
(0.9)
A 		24.3
(-1.1)
A 		65.4
(3)
P 		60
C 27.8
(-1.8)
A 		45.1
(-0.6)
A 		11.6
(-3)
A 		95.2
(3)
P 		84
avr 21.8
(-3) 		35.4
(-1.8) 		25.3
(-2.7) 		90.9
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.4
(-3)
A 		22.2
(-0.2)
A 		37.8
(2.3)
A 		42.4
(3)
A 		33.7
(1.6)
M 		27.7
(0.7)
A 		38
B 16.7
(-0.9)
A 		29.6
(1)
A 		43.2
(3)
A 		2.9
(-3)
A 		34.6
(1.7)
P 		19.9
(-0.5)
A 		40
C 20.7
(-1.1)
A 		45.8
(3)
A 		17.6
(-1.6)
A 		35.2
(1.3)
A 		37.1
(1.6)
A 		8.7
(-3)
A 		37
avr 13.9
(-3) 		32.5
(2.3) 		32.9
(2.4) 		26.8
(0.7) 		35.1
(3) 		18.8
(-1.6) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.6
(0.8)
A 		3.5
(-3)
A 		10.4
(0.2)
A 		16.4
(3)
A 		13
B 1.8
(-3)
A 		11
(1.6)
A 		5.6
(-1.1)
A 		13.9
(3)
P 		12
C 9.2
(-0.4)
A 		13
(1.5)
A 		4
(-3)
A 		16
(3)
P 		12
avr 7.5
(-2.4) 		9.2
(-1.3) 		6.7
(-3) 		15.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-3)
A 		7.9
(1.3)
A 		8.2
(1.5)
A 		10.7
(3)
A 		10.2
(2.7)
M 		6.7
(0.6)
A 		10
B 5.8
(-0.7)
A 		9.9
(1.1)
A 		10.5
(1.4)
A 		0.8
(-3)
A 		14
(3)
P 		7.4
(0)
A 		13
C 7.7
(-0.4)
A 		14
(3)
A 		4.5
(-2.1)
A 		7.1
(-0.7)
A 		12
(1.9)
A 		2.9
(-3)
A 		11
avr 4.8
(-3) 		10.6
(1.8) 		7.7
(-0.6) 		6.2
(-1.8) 		12.1
(3) 		5.7
(-2.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3718
Sequence Type Exemplar sequence
Representative Public ID AH6.14 NCBI
Target Description AH6.14 /REP_DB=WormBase Gene ID /WP=CE01455 /GEN=sra-9 /TR=SW:Q09212 /GB=CAA88082.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063645 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-9) (sra-9) mRNA, complete cds. 11/11 None
AH6.14 ENSEMBL cdna:known chromosome:CEL140:II:9532221:9533699:1 gene:AH6.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033446 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9532217-9533696(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-9
Ensembl AH6.14
Entrez Gene 191780 Entrez gene
SwissProt Q09212 EMBL-EBI
WormBase CE01455 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88082 Hypothetical protein AH6.14 [Caenorhabditis elegans] ref|NP_496046.1| Serpentine Receptor, class A (alpha) family member (sra-9) [Caenorhabditis elegans] sp|Q09212|SRA9_CAEEL Serpentine receptor class alpha-9 (Protein sra-9) 1.0E-176
blast 2123261J chemosensory receptor 1.0E-175
blast 2123261E chemosensory receptor 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496046.1 6 20-42,57-79,142-164,188-210,237-259,274-296
AH6.14 6 20-42,57-79,142-164,188-210,237-259,274-296
Sequence
Target Sequence 
>C. ELEGANS:188124_AT
attgtgtttttctgtagttccattactggaaagctttttatatgggatgaccccttggat
gggatggttcttggatgcttcattcttcccaaaaatagctataaacggtacaacacttat
tttactgtctgtacagttttacccttattcaatttgggaatatccattcttctgaaaatt
tataacacgaaactggaatattcaagccgctttgaagtgagcgctcgtttccaaaaacgt
gaagtcattgattccactggaacagtttgctttctagcattttctttatttattttattg
tttatctattctgttggagtaggggcattgagacatttgttacacgaaaatataatttca
caagaagacttcaatttgtgtgttgtttggctttatacaattccattcattgcaatgcta
cttccattactcttaatatatcgtatccgccgaactcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTGTTTTTCTGTAGTTCCATTA 302 3 460 Antisense
ATGGGATGACCCCTTGGATGGGATG 140 49 501 Antisense
GGATGGGATGGTTCTTGGATGCTTC 203 515 516 Antisense
CTTGGATGCTTCATTCTTCCCAAAA 67 217 529 Antisense
ACAACACTTATTTTACTGTCTGTAC 126 113 569 Antisense
GTCTGTACAGTTTTACCCTTATTCA 325 471 586 Antisense
GCTTTGAAGTGAGCGCTCGTTTCCA 372 303 668 Antisense
ACGTGAAGTCATTGATTCCACTGGA 231 95 696 Antisense
CCACTGGAACAGTTTGCTTTCTAGC 15 275 713 Antisense
TGCAATGCTACTTCCATTACTCTTA 331 577 870 Antisense
ATATATCGTATCCGCCGAACTCGTT 612 19 895 Antisense
Sequence Source Affymetrix Proprietary Database