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[188123_at] lipase

Description B0035.13 /REP_DB=WormBase Gene ID /WP=CE05168 /TR=Q17437 /GB=CAA97415.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lipase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      6grp_highest_nonorm > 33      6grp_total > 52      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2464
1 2 3 4 range
A 2258
(3)
P 		1388.9
(0.7)
P 		1923.6
(2.1)
P 		22.1
(-3)
A 		2236
B 2073.2
(3)
P 		2080.5
(3)
P 		2079
(3)
P 		43.4
(-3)
A 		2037
C 2486
(3)
P 		1777.6
(1.2)
P 		1814
(1.3)
P 		84.8
(-3)
A 		2401
avr 2272.4
(3) 		1749
(1.6) 		1938.9
(2.1) 		50.1
(-3) 		2222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2831
1 2 3 4 5 6 range
A 1148.9
(-1.6)
P 		2063.2
(0.3)
P 		3337.5
(3)
P 		2290.5
(0.8)
P 		1134
(-1.7)
P 		506.7
(-3)
P 		2831
B 1570.3
(-0.7)
P 		2357.6
(1.1)
P 		3181.7
(3)
P 		1353.9
(-1.2)
P 		2008.6
(0.3)
P 		572.8
(-3)
P 		2609
C 1738.2
(0.7)
P 		2015.5
(1.6)
P 		2431.2
(3)
P 		2115.2
(1.9)
P 		1471.6
(-0.3)
P 		661.4
(-3)
P 		1770
avr 1485.8
(-0.7) 		2145.4
(0.9) 		2983.5
(3) 		1919.9
(0.3) 		1538.1
(-0.6) 		580.3
(-3) 		2403
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 820
1 2 3 4 range
A 822.1
(3)
P 		301.5
(-0.8)
P 		502.9
(0.7)
P 		3.2
(-3)
A 		819
B 661.1
(3)
P 		513.8
(1.6)
P 		481.7
(1.3)
P 		9.3
(-3)
A 		652
C 822.9
(3)
P 		511.1
(0.7)
P 		632.2
(1.6)
P 		14.3
(-3)
A 		809
avr 768.7
(3) 		442.1
(0.4) 		538.9
(1.2) 		8.9
(-3) 		760

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 693
1 2 3 4 5 6 range
A 211.8
(-2.1)
P 		733.8
(3)
P 		726.8
(2.9)
P 		580.9
(1.5)
P 		342.2
(-0.8)
P 		123.4
(-3)
P 		610
B 546.4
(0.3)
P 		784.7
(2.7)
P 		772.6
(2.6)
P 		358.6
(-1.6)
P 		816.1
(3)
P 		213.6
(-3)
P 		603
C 644.3
(3)
P 		615
(2.6)
P 		618.8
(2.6)
P 		425.4
(-0.1)
P 		476.2
(0.6)
P 		221.4
(-3)
P 		423
avr 467.5
(0.2) 		711.2
(3) 		706.1
(2.9) 		455
(0.1) 		544.8
(1.1) 		186.1
(-3) 		525
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8646
Sequence Type Exemplar sequence
Representative Public ID B0035.13 NCBI
Target Description B0035.13 /REP_DB=WormBase Gene ID /WP=CE05168 /TR=Q17437 /GB=CAA97415.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069722(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069722 NCBI Caenorhabditis elegans B0035.13 (lipase) mRNA, complete cds. 11/11 None
SNAP00000035829 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11304802:11306674:-1 11/11 None
GENEFINDER00000035853 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11304802:11306674:-1 11/11 None
B0035.13 ENSEMBL cdna:known chromosome:CEL140:IV:11304706:11306691:-1 gene:B0035.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11304807-11306680(-) 100.0 100.0
Public Domain and Genome References
Gene Title lipase
Ensembl B0035.13
Entrez Gene 178041 Entrez gene
SwissProt Q17437 EMBL-EBI
WormBase CE05168 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97415 Hypothetical protein B0035.13 [Caenorhabditis elegans] ref|NP_502123.1| B0035.13 [Caenorhabditis elegans] 1.0E-146
blast CAE62049 Hypothetical protein CBG06065 [Caenorhabditis briggsae] 1.0E-122
blast CAE64879 Hypothetical protein CBG09691 [Caenorhabditis briggsae] 9.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 3.4E-61
Sequence
Target Sequence 
>C. ELEGANS:188123_AT
taatgctattgttctcagcttcagaggaactcaaggattccttcaattgattgaagaagc
agacaagtcagtattccaatcacaatctcaatgggttgccggtggaaaagtatcaaaata
ctttggagatgcatttaataaactttggaatggtggaatgaaagatgatttcaataatct
tttccataataatccaaagtttgaagtatgggttactggacattcattgggtggagcaat
ggcatcattggctgcttcattccttattgctaataatattgtaccaggaaatcaagtgaa
attggttacttatgggcaaccaagaactggaacaactccatttgcagttgctcatgatgc
tcaaatggcttattcatatagagttacacataatagagatattgttccacatattccaaa
tgaaggaatggaagattataagcatcataaagcagaggttttctacaaagaatcaatgaa
tgctggagcttctttcaaagtttgctcatcttccgatgaatcgaatgattgttccaatgg
acttttgattactgcatctgtttctgatcatctcacttatttcaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGCTATTGTTCTCAGCTTCAGA 295 635 282 Antisense
AGCAGACAAGTCAGTATTCCAATCA 388 77 339 Antisense
GTCAGTATTCCAATCACAATCTCAA 300 467 348 Antisense
ACAATCTCAATGGGTTGCCGGTGGA 111 115 363 Antisense
AATAATCTTTTCCATAATAATCCAA 650 169 454 Antisense
GGGTTACTGGACATTCATTGGGTGG 83 495 491 Antisense
ATGGCATCATTGGCTGCTTCATTCC 292 53 520 Antisense
CTGCTTCATTCCTTATTGCTAATAA 595 237 533 Antisense
AAGAACTGGAACAACTCCATTTGCA 707 151 603 Antisense
GAATCAATGAATGCTGGAGCTTCTT 703 325 751 Antisense
CTGATCATCTCACTTATTTCACCAA 86 239 845 Antisense
Sequence Source Affymetrix Proprietary Database