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[188122_at] Globin

Description Y17G7B.6 /REP_DB=WormBase Gene ID /WP=CE19039 /TR=Q9XXI2 /GB=CAA19459.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Globin
Cluster 6grp_total > 04      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 189.7
(0)
A 		171.4
(-0.4)
A 		64.4
(-3)
A 		312.7
(3)
A 		248
B 183.6
(0.3)
A 		132.5
(-1.6)
A 		93.5
(-3)
A 		258.6
(3)
P 		165
C 173.4
(0.7)
A 		141
(-0.6)
A 		78.3
(-3)
A 		234.3
(3)
A 		156
avr 182.2
(0.3) 		148.3
(-0.8) 		78.7
(-3) 		268.5
(3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 173.1
(3)
A 		126.3
(0.3)
A 		128.3
(0.4)
A 		160.8
(2.3)
A 		107.5
(-0.8)
A 		70.1
(-3)
A 		103
B 146.3
(3)
A 		120.4
(-0.6)
A 		117.3
(-1)
A 		102.9
(-3)
A 		133.6
(1.2)
A 		107.2
(-2.4)
A 		43
C 124.8
(1.4)
A 		147.3
(3)
A 		100.7
(-0.4)
A 		119.2
(0.9)
A 		65.3
(-3)
A 		110.7
(0.3)
A 		82
avr 148.1
(3) 		131.3
(1.1) 		115.4
(-0.8) 		127.6
(0.6) 		102.1
(-2.3) 		96
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 69.1
(3)
A 		37.2
(-0.7)
A 		16.8
(-3)
A 		45.8
(0.3)
A 		52
B 58.6
(3)
A 		32.7
(-1.2)
A 		21.7
(-3)
A 		55.1
(2.4)
P 		37
C 57.4
(3)
A 		40.5
(-0.4)
A 		27.3
(-3)
A 		39.5
(-0.6)
A 		30
avr 61.7
(3) 		36.8
(-0.8) 		21.9
(-3) 		46.8
(0.8) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 31.9
(0.2)
A 		44.9
(3)
A 		27.9
(-0.7)
A 		40.8
(2.1)
A 		32.4
(0.3)
A 		17.1
(-3)
A 		28
B 50.9
(2.2)
A 		40.1
(-0.2)
A 		28.5
(-2.7)
A 		27.3
(-3)
A 		54.3
(3)
A 		40
(-0.2)
A 		27
C 46.3
(3)
A 		45
(2.7)
A 		25.6
(-1.9)
A 		24
(-2.3)
A 		21.1
(-3)
A 		37.1
(0.8)
A 		25
avr 43
(2.9) 		43.3
(3) 		27.3
(-3) 		30.7
(-1.7) 		35.9
(0.2) 		31.4
(-1.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3889
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.6 NCBI
Target Description Y17G7B.6 /REP_DB=WormBase Gene ID /WP=CE19039 /TR=Q9XXI2 /GB=CAA19459.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Globin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064158(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064158 NCBI Caenorhabditis elegans Y17G7B.6 (Globin) mRNA, complete cds. 11/11 None
GENEFINDER00000030399 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12013086:12023570:1 11/11 None
Y17G7B.6 ENSEMBL cdna:known chromosome:CEL140:II:12021216:12023570:1 gene:Y17G7B.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030319 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12021212-12023567(+) 100.0 100.0
Public Domain and Genome References
Gene Title Globin
Ensembl Y17G7B.6
Entrez Gene 189454 Entrez gene
SwissProt Q9XXI2 EMBL-EBI
WormBase CE19039 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19459 Hypothetical protein Y17G7B.6 [Caenorhabditis elegans] ref|NP_496559.1| Y17G7B.6 [Caenorhabditis elegans] 1.0E-109
blast CAE73552 Hypothetical protein CBG21021 [Caenorhabditis briggsae] 1.0E-102
blast CAA19459 Hypothetical protein Y17G7B.6 [Caenorhabditis elegans] ref|NP_496559.1| Y17G7B.6 [Caenorhabditis elegans] 1.0E-102
blast CAE73552 Hypothetical protein CBG21021 [Caenorhabditis briggsae] 1.0E-95
blast CAA90269 Hypothetical protein W01C9.5 [Caenorhabditis elegans] ref|NP_495806.1| W01C9.5 [Caenorhabditis elegans] 6.0E-12
blast CAA90269 Hypothetical protein W01C9.5 [Caenorhabditis elegans] ref|NP_495806.1| W01C9.5 [Caenorhabditis elegans] 1.0E-11
Sequence
Target Sequence 
>C. ELEGANS:188122_AT
ctgtccgacaccaatgtgacaccgcaaataagcagatgtgccaagttgaacctttctgtg
aaacagaaaaaattgttgaggcaaagtttcaatgcgatgaattcgggcggcacattcctc
aaactcatggagaaaattttcagacgcctcgagacaaagtgcccagatatgagatcgata
tttctcactaccgcattcgtgaactcactgagccgcgaacgccagactccgccccttgta
aagacggaatatgaccactgtaaatgtatggttggaatattcgagagacttattgaaaat
ttggaaaatattaacgagcagttgacgatgatacggcattatggagagaaacatgctcag
atggctgaaagtgggttcactggagcgatgattgagcaatttggagagatttcggttttc
gtgatcggctcgcaagatgtcgtaaaatttaatcacgagactgtaaaagcctggaggctc
ctgttggcctgtgtaactgacgagatgaaggtcggattcgacagaatgtcacgtataaat
ggccgccgaaacagctgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTCCGACACCAATGTGACACCGC 377 239 73 Antisense
AATGCGATGAATTCGGGCGGCACAT 377 167 163 Antisense
CGGCACATTCCTCAAACTCATGGAG 402 241 180 Antisense
TCAGACGCCTCGAGACAAAGTGCCC 156 625 212 Antisense
CGATATTTCTCACTACCGCATTCGT 327 249 248 Antisense
CGCATTCGTGAACTCACTGAGCCGC 215 255 264 Antisense
GAGATTTCGGTTTTCGTGATCGGCT 298 395 478 Antisense
GTGATCGGCTCGCAAGATGTCGTAA 258 485 493 Antisense
AAAAGCCTGGAGGCTCCTGTTGGCC 420 131 537 Antisense
CTCCTGTTGGCCTGTGTAACTGACG 661 233 550 Antisense
TAAATGGCCGCCGAAACAGCTGCAA 2 641 608 Antisense
Sequence Source Affymetrix Proprietary Database