[Home] | [Total List]

[188121_s_at]

Description F46G10.5 /REP_DB=WormBase Gene ID /WP=CE02241 /GEN=ptr-24 /TR=Q20479 /GB=CAA90545.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 65      6grp_total > 90      4grp_total > 05      6grp_highest_sub > 04      6grp_cgc > 95      6grp_high1_sub > 04      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1211
1 2 3 4 range
A 1137.9
(-0.6)
P 		784.3
(-2.4)
P 		661.2
(-3)
P 		1858.9
(3)
P 		1198
B 1319.2
(0.3)
P 		655.5
(-3)
P 		939
(-1.6)
P 		1866.8
(3)
P 		1211
C 1107.6
(-0.6)
P 		699.7
(-3)
P 		849.5
(-2.1)
P 		1706.4
(3)
P 		1007
avr 1188.2
(-0.4) 		713.2
(-3) 		816.6
(-2.4) 		1810.7
(3) 		1098

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 618
1 2 3 4 5 6 range
A 1289.8
(2)
P 		1305.8
(2.2)
P 		866
(-3)
P 		1375
(3)
P 		1157.2
(0.4)
P 		1282
(1.9)
P 		509
B 1349.4
(2.6)
P 		1098.3
(-3)
P 		1190.9
(-0.9)
P 		1367.4
(3)
P 		1238.8
(0.1)
P 		1272.9
(0.9)
P 		269
C 1132.1
(-3)
P 		1294.8
(-0.2)
P 		1410.6
(1.8)
P 		1483.6
(3)
P 		1133.2
(-3)
P 		1339.4
(0.5)
P 		352
avr 1257.1
(-0.6) 		1233
(-1.2) 		1155.8
(-3) 		1408.7
(3) 		1176.4
(-2.5) 		1298.1
(0.4) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 414.3
(3)
P 		170.2
(-3)
P 		172.8
(-2.9)
P 		272.1
(-0.5)
P 		244
B 420.7
(3)
P 		161.9
(-3)
P 		217.6
(-1.7)
P 		397.8
(2.5)
P 		259
C 366.6
(3)
P 		201.2
(-3)
P 		296.1
(0.4)
P 		287.7
(0.1)
P 		165
avr 400.5
(3) 		177.8
(-3) 		228.8
(-1.6) 		319.2
(0.8) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 237.8
(-1.9)
P 		464.4
(3)
P 		188.6
(-3)
P 		348.7
(0.5)
P 		349.2
(0.5)
P 		312.1
(-0.3)
P 		276
B 469.5
(2.1)
P 		365.6
(-0.9)
P 		289.2
(-3)
P 		362.2
(-1)
P 		503.3
(3)
P 		474.7
(2.2)
P 		214
C 419.6
(1.8)
P 		395.1
(0.9)
P 		359
(-0.6)
P 		298.4
(-3)
P 		366.7
(-0.3)
P 		448.4
(3)
P 		150
avr 375.6
(1.4) 		408.4
(2.9) 		278.9
(-3) 		336.4
(-0.4) 		406.4
(2.8) 		411.7
(3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188121_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17790
Sequence Type Exemplar sequence
Representative Public ID F46G10.5 NCBI
Target Description F46G10.5 /REP_DB=WormBase Gene ID /WP=CE02241 /GEN=ptr-24 /TR=Q20479 /GB=CAA90545.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077821 NCBI Caenorhabditis elegans PaTched Related family member (ptr-24) (ptr-24) mRNA, complete cds. 11/11 None
GENEFINDER00000042675 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13342101:13347783:1 11/11 None
F46G10.5 ENSEMBL cdna:known chromosome:CEL140:X:13342101:13348038:1 gene:F46G10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042667 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13342283-13347783(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ptr-24
Ensembl F46G10.5
Entrez Gene 181456 Entrez gene
SwissProt Q20479 EMBL-EBI
WormBase CE31522 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8158 hedgehog receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90545 Hypothetical protein F46G10.5 [Caenorhabditis elegans] ref|NP_510222.2| PaTched Related family member (ptr-24) [Caenorhabditis elegans] 0.0
blast CAE63369 Hypothetical protein CBG07780 [Caenorhabditis briggsae] 0.0
blast AAB42308 Patched related family protein 5 [Caenorhabditis elegans] ref|NP_510810.3| PaTched Related family member (ptr-5) [Caenorhabditis elegans] 3.0E-26
blast AAB42308 Patched related family protein 5 [Caenorhabditis elegans] ref|NP_510810.3| PaTched Related family member (ptr-5) [Caenorhabditis elegans] 6.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510222.2 11 186-208,220-242,247-269,290-312,322-344,390-409,589-611,618-640,650-672,693-715,725-747
F46G10.5 11 186-208,220-242,247-269,290-312,322-344,390-409,589-611,618-640,650-672,693-715,725-747
GENEFINDER00000042675 13 15-37,139-161,247-269,281-303,308-330,351-373,383-405,451-470,650-672,679-701,711-733,754-776,786-808
Sequence
Target Sequence 
>C. ELEGANS:188121_S_AT
cttcaagtcccattggtcgttgcagtcatcccactggttggaacggttgctatgtttatt
gtcagtacaattattattggaaacttgtcagttgccgtgctcaatttcatcgccgtgtgt
attttgtacgcttcaacaatcggaactgtttccctgtatgacgtcactatcaatcccttc
aatgcggcatttttcctgattattgctgccttggcaccgagctgtacaacgcactattgc
tattattatcaacaggcaatgcgtatcaaattgagagcaaaaaaagttgacagaatgaac
gagatgctgagaaagtgtttctttccgtgcattgcgagtgtcatatgctctattgcggtc
ttcgtgccgactatgttctgccatataaacatcttcgaatcagtggctttcaccaacaac
gtgttttgtctgttgggtattgtcatcgcattcttcgtgcaagtcatgctcaacatgctc
cccgacatgttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCAAGTCCCATTGGTCGTTGCAG 641 221 1513 Antisense
TGGAAACTTGTCAGTTGCCGTGCTC 359 547 1590 Antisense
TGCTCAATTTCATCGCCGTGTGTAT 267 581 1610 Antisense
CGGAACTGTTTCCCTGTATGACGTC 583 241 1653 Antisense
TATCAATCCCTTCAATGCGGCATTT 140 661 1680 Antisense
TCCTGATTATTGCTGCCTTGGCACC 13 593 1706 Antisense
CATATGCTCTATTGCGGTCTTCGTG 273 215 1854 Antisense
GTGCCGACTATGTTCTGCCATATAA 250 479 1876 Antisense
GAATCAGTGGCTTTCACCAACAACG 48 329 1909 Antisense
CATCGCATTCTTCGTGCAAGTCATG 74 213 1956 Antisense
TCAACATGCTCCCCGACATGTTCAC 20 631 1982 Antisense
Sequence Source Affymetrix Proprietary Database