[Home] | [Total List]

[188119_at]

Description F11C3.2 /REP_DB=WormBase Gene ID /WP=CE20668 /GEN=unc-122 /TR=O18685 /GB=CAB04088.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 11      4grp_high_8_8 > 50      6grp_highest_nonorm > 80      6grp_total > 23      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 306.4
(3)
P 		215.6
(0.4)
P 		244.3
(1.2)
P 		100.4
(-3)
P 		206
B 326.8
(3)
P 		236.6
(1.3)
P 		188.3
(0.3)
P 		15.9
(-3)
A 		311
C 300.8
(3)
P 		205.5
(0.6)
P 		236.2
(1.4)
P 		63.8
(-3)
P 		237
avr 311.3
(3) 		219.2
(0.8) 		222.9
(0.9) 		60
(-3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 313.2
(3)
P 		265.2
(1.8)
P 		215.3
(0.6)
P 		197
(0.1)
P 		81.7
(-2.7)
P 		70.9
(-3)
P 		242
B 262.5
(3)
P 		263.2
(3)
P 		218.8
(1.8)
P 		204.1
(1.4)
P 		125.1
(-0.7)
P 		41.5
(-3)
P 		222
C 262.9
(2.4)
P 		230.1
(1.4)
P 		281.1
(3)
P 		206.7
(0.6)
P 		109
(-2.5)
P 		92.1
(-3)
P 		189
avr 279.5
(3) 		252.8
(2.2) 		238.4
(1.8) 		202.6
(0.8) 		105.3
(-1.9) 		68.2
(-3) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 111.6
(3)
P 		46.8
(-1)
P 		63.9
(0)
P 		14.7
(-3)
P 		97
B 104.2
(3)
P 		58.4
(0.3)
P 		43.6
(-0.6)
P 		3.4
(-3)
A 		101
C 99.6
(3)
P 		59.1
(0.3)
P 		82.3
(1.8)
P 		10.8
(-3)
P 		89
avr 105.1
(3) 		54.8
(-0.2) 		63.3
(0.4) 		9.6
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 57.7
(0.1)
P 		94.3
(3)
P 		46.9
(-0.7)
P 		50
(-0.5)
P 		24.7
(-2.4)
P 		17.3
(-3)
P 		77
B 91.3
(3)
P 		87.6
(2.7)
P 		53.1
(-0)
P 		54
(0)
P 		50.8
(-0.2)
P 		15.5
(-3)
P 		76
C 97.4
(3)
P 		70.2
(0.5)
P 		71.5
(0.7)
P 		41.6
(-2)
P 		35.3
(-2.6)
P 		30.8
(-3)
P 		67
avr 82.1
(2.8) 		84
(3) 		57.2
(0.4) 		48.5
(-0.4) 		36.9
(-1.5) 		21.2
(-3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2041
Sequence Type Exemplar sequence
Representative Public ID F11C3.2 NCBI
Target Description F11C3.2 /REP_DB=WormBase Gene ID /WP=CE20668 /GEN=unc-122 /TR=O18685 /GB=CAB04088.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061197 NCBI Caenorhabditis elegans UNCoordinated family member (unc-122) (unc-122) mRNA, complete cds. 11/11 None
SNAP00000023705 ENSEMBL cdna:SNAP chromosome:CEL140:I:14880280:14883496:1 11/11 None
GENEFINDER00000023710 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14880280:14883496:1 11/11 None
F11C3.2 ENSEMBL cdna:known chromosome:CEL140:I:14880280:14883496:1 gene:F11C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14880210-14883427(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol unc-122
Ensembl F11C3.2
Entrez Gene 173359 Entrez gene
SwissProt O18685 EMBL-EBI
WormBase CE20668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04088 Hypothetical protein F11C3.2 [Caenorhabditis elegans] ref|NP_493598.1| UNCoordinated family member (unc-122) [Caenorhabditis elegans] gb|AAR87493.1| UNC-122 [Caenorhabditis elegans] 0.0
blast CAE72544 Hypothetical protein CBG19728 [Caenorhabditis briggsae] 0.0
blast AAN60526 Colmedin (collagen plus olfactomedin) family protein 2 [Caenorhabditis elegans] ref|NP_491804.2| COlmedin (collagen plus olFactomedin) family member (cof-2) [Caenorhabditis elegans] gb|AAR87492.1| collagen/olfactomedin domain containing protein 2 [Caenorhabditis elegans] 7.0E-33
blast AAN60526 Colmedin (collagen plus olfactomedin) family protein 2 [Caenorhabditis elegans] ref|NP_491804.2| COlmedin (collagen plus olFactomedin) family member (cof-2) [Caenorhabditis elegans] gb|AAR87492.1| collagen/olfactomedin domain containing protein 2 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR003112 EMBL-EBI Olfactomedin-like 1.0E-126
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 1.6E-7
Pfam IPR003112 EMBL-EBI Olfactomedin-like 1.0E-126
Pfam IPR003112 EMBL-EBI Olfactomedin-like 1.0E-126
Pfam IPR003112 EMBL-EBI Olfactomedin-like 4.1E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493598.1 1 20-42
F11C3.2 1 20-42
SNAP00000023705 1 20-42
GENEFINDER00000023710 2 20-42,546-568
Sequence
Target Sequence 
>C. ELEGANS:188119_AT
acaacgagtctggttcgctatgaactagagacaggagttcaagtggaagcagaactagat
cctgaaatgtcacatattgattgtggacgacttccggatcatactttcgaagaatgtaat
gcaactgacagacatgtgtggttatatgatagaccacataactacgtcgacttcgctgtt
gatgaaaatggcctttgggcaatctacgctggcgccgattcggaaaccatgagaatggca
aagatcgagccaagcctttttgtggtgaacatctggaatgttgaggtgaatacgactgaa
atcgccgactctttcattatgtgtggagtgtggtatgggctaaagagtgcgaacaatttg
caaacccagataacacatgcatatgatttgttcagaaatgacacaatcccaggacaagtt
gaatggtacaatccatatcaaggtctgacaatgcttcactacaatccactggatgctcgt
ctgtacttcttcgataatagcagcctcttgtcggtgaatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACGAGTCTGGTTCGCTATGAAC 244 113 1249 Antisense
GACGACTTCCGGATCATACTTTCGA 489 379 1334 Antisense
AACTACGTCGACTTCGCTGTTGATG 303 139 1408 Antisense
TGGCCTTTGGGCAATCTACGCTGGC 274 545 1437 Antisense
CGCTGGCGCCGATTCGGAAACCATG 659 251 1455 Antisense
GATCGAGCCAAGCCTTTTTGTGGTG 672 417 1491 Antisense
GAATACGACTGAAATCGCCGACTCT 223 327 1536 Antisense
TCGCCGACTCTTTCATTATGTGTGG 657 599 1550 Antisense
CAATGCTTCACTACAATCCACTGGA 4 183 1697 Antisense
TGCTCGTCTGTACTTCTTCGATAAT 438 581 1722 Antisense
ATAGCAGCCTCTTGTCGGTGAATGT 614 21 1745 Antisense
Sequence Source Affymetrix Proprietary Database