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[188118_s_at]

Description Y37A1B.13 /REP_DB=WormBase Gene ID /WP=CE19083 /GEN=tor-2 /TR=Q9XXG5 /GB=CAA19484.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 30      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 12.9
(2)
A 		3.1
(-2.9)
A 		3
(-3)
A 		14.8
(3)
A 		12
B 53
(3)
A 		6.8
(-2.6)
A 		5.7
(-2.8)
A 		3.8
(-3)
A 		49
C 28.8
(0.1)
A 		19.2
(-1.2)
A 		6.7
(-3)
A 		48.8
(3)
A 		42
avr 31.6
(3) 		9.7
(-2) 		5.1
(-3) 		22.5
(0.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 8.5
(-2.2)
A 		5.1
(-2.6)
A 		38.7
(1.5)
A 		51.3
(3)
A 		5.7
(-2.6)
A 		2.2
(-3)
A 		49
B 3.7
(-2.8)
A 		51
(3)
A 		15
(-1.4)
A 		7
(-2.4)
A 		2.4
(-2.9)
A 		1.9
(-3)
A 		49
C 26.8
(-1)
A 		77
(3)
A 		33.7
(-0.5)
A 		21.3
(-1.5)
A 		5.4
(-2.8)
A 		2.5
(-3)
A 		75
avr 13
(-1.5) 		44.4
(3) 		29.1
(0.8) 		26.5
(0.5) 		4.5
(-2.7) 		2.2
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.7
(3)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		2.2
(-0.8)
A 		4
B 16.9
(3)
A 		1.7
(-2.7)
A 		1.3
(-2.8)
A 		0.8
(-3)
A 		16
C 9.5
(3)
A 		5.5
(-0.3)
A 		2.3
(-3)
A 		8.2
(1.9)
A 		7
avr 10.4
(3) 		2.6
(-2.3) 		1.5
(-3) 		3.7
(-1.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.6
(-2.5)
A 		1.8
(-2.4)
A 		8.4
(0.8)
A 		13
(3)
A 		1.7
(-2.4)
A 		0.5
(-3)
A 		13
B 1.3
(-2.8)
A 		17
(3)
A 		3.6
(-1.9)
A 		1.9
(-2.6)
A 		1
(-2.9)
A 		0.7
(-3)
A 		16
C 9.9
(-0.6)
A 		23.5
(3)
A 		8.6
(-0.9)
A 		4.3
(-2.1)
A 		1.8
(-2.7)
A 		0.8
(-3)
A 		23
avr 4.3
(-1.4) 		14.1
(3) 		6.9
(-0.2) 		6.4
(-0.4) 		1.5
(-2.6) 		0.7
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188118_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9093
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.13 NCBI
Target Description Y37A1B.13 /REP_DB=WormBase Gene ID /WP=CE19083 /GEN=tor-2 /TR=Q9XXG5 /GB=CAA19484.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070283(11), NM_070282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070283 NCBI Caenorhabditis elegans human TORsin related family member (tor-1) (tor-1) mRNA, complete cds. 11/11 A 
NM_070282 NCBI Caenorhabditis elegans human TORsin related family member (tor-2) (tor-2) mRNA, complete cds. 11/11 A 
SNAP00000004216 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13982653:13983835:-1 11/11 None
SNAP00000004217 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13984483:13985662:-1 11/11 None
GENEFINDER00000004230 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13980655:13983907:-1 11/11 None
GENEFINDER00000004241 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13984483:13987436:-1 11/11 None
Y37A1B.13 ENSEMBL cdna:known chromosome:CEL140:IV:13982653:13984135:-1 gene:Y37A1B.13 11/11 A 
Y37A1B.12 ENSEMBL cdna:known chromosome:CEL140:IV:13984483:13987436:-1 gene:Y37A1B.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13982658-13984141(-) 98.22 100.0
Public Domain and Genome References
Gene Title

Gene Symbol tor-1
tor-2
Ensembl Y37A1B.13
Y37A1B.12
Entrez Gene 189605 Entrez gene
189606 Entrez gene
SwissProt O45271 EMBL-EBI
Q9XXG5 EMBL-EBI
WormBase CE19082 Wormbase
CE19083 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30583.1.S1_AT similar to Torsin A precursor (Torsin family 1 member A) (Dystonia 1 protein) cfa
CHICKEN:GGA.7388.1.S1_S_AT torsin family 1, member A (torsin A) gga
CHICKEN:GGA.7388.2.S1_AT torsin family 1, member A (torsin A) gga
CHICKEN:GGA.7388.2.S1_S_AT torsin family 1, member A (torsin A) gga
CHICKEN:GGAAFFX.12846.1.S1_AT torsin family 1, member A (torsin A) gga
HG-U133_PLUS_2:202348_S_AT torsin family 1, member A (torsin A) hs
HG-U133A:202348_S_AT torsin family 1, member A (torsin A) hs
HG-FOCUS:202348_S_AT torsin family 1, member A (torsin A) hs
HG-U133A_2:202348_S_AT torsin family 1, member A (torsin A) hs
HG-U133_PLUS_2:202349_AT torsin family 1, member A (torsin A) hs
HG-U133A:202349_AT torsin family 1, member A (torsin A) hs
HG-U133A_2:202349_AT torsin family 1, member A (torsin A) hs
HU35KSUBA:RC_AA463871_AT torsin family 1, member A (torsin A) hs
HU35KSUBA:W27017_AT torsin family 1, member A (torsin A) hs
HU35KSUBA:RC_AA081457_AT torsin family 1, member A (torsin A) hs
U133_X3P:G4557540_3P_AT torsin family 1, member A (torsin A) hs
U133_X3P:G12653776_3P_X_AT torsin family 1, member A (torsin A) hs
U133_X3P:G12653776_3P_A_AT torsin family 1, member A (torsin A) hs
U133_X3P:HS2.19261.2.S1_3P_AT torsin family 1, member A (torsin A) hs
U133_X3P:202348_3P_S_AT torsin family 1, member A (torsin A) hs
HG-U133_PLUS_2:1554849_AT torsin family 1, member A (torsin A) hs
HG-U95AV2:32234_AT torsin family 1, member A (torsin A) hs
HG-U95C:66326_AT Torsin family 1, member A (torsin A) hs
MG-U74BV2:112809_AT torsin family 1, member A (torsin A) mm
MOE430A:1426515_A_AT torsin family 1, member A (torsin A) mm
MOUSE430A_2:1426515_A_AT torsin family 1, member A (torsin A) mm
MOUSE430_2:1426515_A_AT torsin family 1, member A (torsin A) mm
MU19KSUBB:TC34315_AT Torsin family 1, member A (torsin A) (Tor1a), mRNA mm
MU19KSUBB:TC34315_G_AT Torsin family 1, member A (torsin A) (Tor1a), mRNA mm
RG-U34C:RC_AI072675_AT dystonia 1 rn
RAE230A:1375357_AT dystonia 1 rn
RAT230_2:1375357_AT dystonia 1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19484 Hypothetical protein Y37A1B.13 [Caenorhabditis elegans] ref|NP_502683.1| human TORsin related family member (tor-2) [Caenorhabditis elegans] 0.0
blast CAA19495 Hypothetical protein Y37A1B.12 [Caenorhabditis elegans] ref|NP_502684.1| human TORsin related family member (tor-1) [Caenorhabditis elegans] 1.0E-180
blast CAA19495 Hypothetical protein Y37A1B.12 [Caenorhabditis elegans] ref|NP_502684.1| human TORsin related family member (tor-1) [Caenorhabditis elegans] 1.0E-168
blast CAA19495 Hypothetical protein Y37A1B.12 [Caenorhabditis elegans] ref|NP_502684.1| human TORsin related family member (tor-1) [Caenorhabditis elegans] 1.0E-166
blast CAB05124 Hypothetical protein Y37A1B.15 [Caenorhabditis elegans] emb|CAA19497.3| Hypothetical protein Y37A1B.15 [Caenorhabditis elegans] ref|NP_502681.2| GEX Interacting protein family member (gei-18) [Caenorhabditis elegans] 1.0E-159
blast T26607 hypothetical protein Y37A1B.14 - Caenorhabditis elegans 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Pfam IPR010448 EMBL-EBI Torsin 6.6E-86
Pfam IPR010448 EMBL-EBI Torsin 1.3E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502683.1 3 13-35,50-72,79-101
Y37A1B.13 3 13-35,50-72,79-101
Sequence
Target Sequence 
>C. ELEGANS:188118_S_AT
tcacaactcgagttgaagcattttgaacgaacactgatgctttctgcattcaatgaagaa
ggtggtcttcgtaacactgatatgatctctaatcaacttattgatcattttataccattt
cttcccttatctaagttctacgtttcccagtgcattcaagtacatcttcgaaaacgcgga
agacatgatttggcaaaggatggagaattcatgcaaagagttcttgattctcttgaattt
ttccctgaatctagcaaaatattttcctcgtcaggatgtaaacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACAACTCGAGTTGAAGCATTTTG 478 627 886 Antisense
CCATTTCTTCCCTTATCTAAGTTCT 59 271 1000 Antisense
TATCTAAGTTCTACGTTTCCCAGTG 367 657 1013 Antisense
ACGTTTCCCAGTGCATTCAAGTACA 299 87 1025 Antisense
TCCCAGTGCATTCAAGTACATCTTC 617 597 1030 Antisense
TCAAGTACATCTTCGAAAACGCGGA 632 631 1041 Antisense
AACGCGGAAGACATGATTTGGCAAA 32 147 1058 Antisense
GATTTGGCAAAGGATGGAGAATTCA 275 427 1072 Antisense
TCTCTTGAATTTTTCCCTGAATCTA 332 613 1114 Antisense
TTGAATTTTTCCCTGAATCTAGCAA 540 703 1118 Antisense
ATTTTCCTCGTCAGGATGTAAACGT 444 11 1146 Antisense
Sequence Source Affymetrix Proprietary Database