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[188117_at]

Description Y37A1B.13 /REP_DB=WormBase Gene ID /WP=CE19083 /GEN=tor-2 /TR=Q9XXG5 /GB=CAA19484.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 43      6grp_cgc > 54      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 15.2
(-3)
A 		49.1
(3)
P 		17.3
(-2.6)
A 		15.2
(-3)
A 		34
B 17
(-1.1)
A 		48.4
(3)
P 		18.2
(-1)
A 		2.7
(-3)
A 		46
C 13.9
(-3)
A 		37.5
(3)
A 		23.6
(-0.5)
A 		27.5
(0.5)
A 		24
avr 15.4
(-2.9) 		45
(3) 		19.7
(-2.1) 		15.1
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 1.8
(-3)
A 		22.6
(2)
A 		26.8
(3)
A 		17.8
(0.8)
P 		10.8
(-0.8)
A 		22.3
(1.9)
A 		25
B 25.9
(-2.4)
A 		54.5
(3)
A 		33.8
(-0.9)
A 		29.5
(-1.8)
A 		23
(-3)
A 		26.4
(-2.4)
M 		32
C 31.4
(1.2)
M 		30.4
(1)
P 		42.6
(3)
P 		6
(-3)
A 		38.5
(2.3)
P 		23.6
(-0.1)
A 		37
avr 19.7
(-2.4) 		35.8
(3) 		34.4
(2.5) 		17.8
(-3) 		24.1
(-0.9) 		24.1
(-0.9) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.5
(-0.7)
A 		10.7
(3)
P 		4.5
(-1.4)
A 		2.2
(-3)
A 		9
B 5.4
(-0.5)
A 		12
(3)
P 		4.2
(-1.1)
A 		0.6
(-3)
A 		11
C 4.6
(-3)
A 		10.8
(3)
A 		8.2
(0.5)
A 		4.6
(-3)
A 		6
avr 5.2
(-1.1) 		11.2
(3) 		5.6
(-0.9) 		2.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.3
(-3)
A 		8
(3)
A 		5.8
(1.3)
A 		4.5
(0.3)
P 		3.3
(-0.7)
A 		5.4
(1)
A 		8
B 9
(-2.3)
A 		18.1
(3)
A 		8.2
(-2.8)
A 		7.8
(-3)
A 		9.3
(-2.1)
A 		9.8
(-1.8)
M 		10
C 11.6
(2.5)
M 		9.3
(1.3)
P 		10.8
(2.1)
P 		1.2
(-3)
A 		12.5
(3)
P 		7.9
(0.6)
A 		11
avr 7
(-0.9) 		11.8
(3) 		8.3
(0.1) 		4.5
(-3) 		8.4
(0.2) 		7.7
(-0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9093
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.13 NCBI
Target Description Y37A1B.13 /REP_DB=WormBase Gene ID /WP=CE19083 /GEN=tor-2 /TR=Q9XXG5 /GB=CAA19484.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070282 NCBI Caenorhabditis elegans human TORsin related family member (tor-2) (tor-2) mRNA, complete cds. 11/11 A 
SNAP00000004216 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13982653:13983835:-1 11/11 None
GENEFINDER00000004230 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13980655:13983907:-1 10/11 None
Y37A1B.13 ENSEMBL cdna:known chromosome:CEL140:IV:13982653:13984135:-1 gene:Y37A1B.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13982658-13984141(-) 98.22 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tor-2
Ensembl Y37A1B.13
Entrez Gene 189606 Entrez gene
SwissProt Q9XXG5 EMBL-EBI
WormBase CE19083 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30583.1.S1_AT similar to Torsin A precursor (Torsin family 1 member A) (Dystonia 1 protein) cfa
CHICKEN:GGA.7388.1.S1_S_AT torsin family 1, member A (torsin A) gga
CHICKEN:GGA.7388.2.S1_AT torsin family 1, member A (torsin A) gga
CHICKEN:GGA.7388.2.S1_S_AT torsin family 1, member A (torsin A) gga
CHICKEN:GGAAFFX.12846.1.S1_AT torsin family 1, member A (torsin A) gga
HG-U133_PLUS_2:202348_S_AT torsin family 1, member A (torsin A) hs
HG-U133A:202348_S_AT torsin family 1, member A (torsin A) hs
HG-FOCUS:202348_S_AT torsin family 1, member A (torsin A) hs
HG-U133A_2:202348_S_AT torsin family 1, member A (torsin A) hs
HG-U133_PLUS_2:202349_AT torsin family 1, member A (torsin A) hs
HG-U133A:202349_AT torsin family 1, member A (torsin A) hs
HG-U133A_2:202349_AT torsin family 1, member A (torsin A) hs
HU35KSUBA:RC_AA463871_AT torsin family 1, member A (torsin A) hs
HU35KSUBA:W27017_AT torsin family 1, member A (torsin A) hs
HU35KSUBA:RC_AA081457_AT torsin family 1, member A (torsin A) hs
U133_X3P:G4557540_3P_AT torsin family 1, member A (torsin A) hs
U133_X3P:G12653776_3P_X_AT torsin family 1, member A (torsin A) hs
U133_X3P:G12653776_3P_A_AT torsin family 1, member A (torsin A) hs
U133_X3P:HS2.19261.2.S1_3P_AT torsin family 1, member A (torsin A) hs
U133_X3P:202348_3P_S_AT torsin family 1, member A (torsin A) hs
HG-U133_PLUS_2:1554849_AT torsin family 1, member A (torsin A) hs
HG-U95AV2:32234_AT torsin family 1, member A (torsin A) hs
HG-U95C:66326_AT Torsin family 1, member A (torsin A) hs
MG-U74BV2:112809_AT torsin family 1, member A (torsin A) mm
MOE430A:1426515_A_AT torsin family 1, member A (torsin A) mm
MOUSE430A_2:1426515_A_AT torsin family 1, member A (torsin A) mm
MOUSE430_2:1426515_A_AT torsin family 1, member A (torsin A) mm
MU19KSUBB:TC34315_AT Torsin family 1, member A (torsin A) (Tor1a), mRNA mm
MU19KSUBB:TC34315_G_AT Torsin family 1, member A (torsin A) (Tor1a), mRNA mm
RG-U34C:RC_AI072675_AT dystonia 1 rn
RAE230A:1375357_AT dystonia 1 rn
RAT230_2:1375357_AT dystonia 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA19484 Hypothetical protein Y37A1B.13 [Caenorhabditis elegans] ref|NP_502683.1| human TORsin related family member (tor-2) [Caenorhabditis elegans] 0.0
blast CAB05124 Hypothetical protein Y37A1B.15 [Caenorhabditis elegans] emb|CAA19497.3| Hypothetical protein Y37A1B.15 [Caenorhabditis elegans] ref|NP_502681.2| GEX Interacting protein family member (gei-18) [Caenorhabditis elegans] 1.0E-159
blast T26607 hypothetical protein Y37A1B.14 - Caenorhabditis elegans 1.0E-159
blast CAA19495 Hypothetical protein Y37A1B.12 [Caenorhabditis elegans] ref|NP_502684.1| human TORsin related family member (tor-1) [Caenorhabditis elegans] 1.0E-137
blast CAE59779 Hypothetical protein CBG03231 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Pfam IPR010448 EMBL-EBI Torsin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502683.1 3 13-35,50-72,79-101
Y37A1B.13 3 13-35,50-72,79-101
Sequence
Target Sequence 
>C. ELEGANS:188117_AT
atcaacttataagatcggcccgaagatgtcagcgatctatttttatatttgatgagacgg
ataagctacaaagtgaattgattcaagtgatcaaaccatttcttgattattatccggcgg
tctttggagtggactttcggaaaactatcttcatttttctaagcaacaaagggagcaaag
aaattgctaatatcgcattagaacatcatgaaaatggtaaaataagatcacaactcgagt
tgaagcattttgaacgaacactgatgctttctgcattcaatgaagaaggtggtcttcgta
acactgatatgatctctaatcaacttattgatcattttataccatttcttcccttatcta
agttctacgtttcccagtgcattcaagtacatcttcgaaaacgcggaagacatgatttgg
caaaggatggagaattcatgcaaagagttcttgattctcttgaatttttccctgaatcta
gcaaaatattttcctcgtcaggatgtaaacgtgtgaatgcaaagactgatctcgaaattt
ccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAACTTATAAGATCGGCCCGAAG 229 25 659 Antisense
TCGGCCCGAAGATGTCAGCGATCTA 522 603 673 Antisense
ATGTCAGCGATCTATTTTTATATTT 308 49 684 Antisense
TCTTGATTATTATCCGGCGGTCTTT 140 611 759 Antisense
GGCGGTCTTTGGAGTGGACTTTCGG 630 497 774 Antisense
GGACTTTCGGAAAACTATCTTCATT 86 509 789 Antisense
GAACGAACACTGATGCTTTCTGCAT 545 345 910 Antisense
GAAGGTGGTCTTCGTAACACTGATA 345 335 943 Antisense
ACACTGATATGATCTCTAATCAACT 645 109 959 Antisense
GATCATTTTATACCATTTCTTCCCT 256 421 988 Antisense
AAAGACTGATCTCGAAATTTCCAAG 194 123 1179 Antisense
Sequence Source Affymetrix Proprietary Database